Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,840,053 – 7,840,151 |
Length | 98 |
Max. P | 0.792843 |
Location | 7,840,053 – 7,840,151 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.11 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -16.40 |
Energy contribution | -17.02 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.09 |
Mean z-score | -1.91 |
Structure conservation index | 0.68 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792843 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7840053 98 + 22224390 -------------------GAUGGCACACACUUACGGGUUAAAUAAUAUCAAGCAUAUGCGAGUGCCAUUAC---AUCCUUGUAAUUGCCAAAAUAAUGGGAAUUAUGCGUAUGAGAAAG -------------------((((((((.........(((........)))..((....))..)))))))).(---((.(.(((((((.(((......))).))))))).).)))...... ( -23.50) >DroEre_CAF1 25381 98 + 1 -------------------AAUGGCACACACUUACGGGUUAAAUAAUAUCAAGCAUAUGCAAGUGCCAUUAC---AUCCUUGUAAUUGCCAAAAUAAUGGGAAUUAUGCGUAUGAGAAAG -------------------((((((((.........(((........)))..((....))..)))))))).(---((.(.(((((((.(((......))).))))))).).)))...... ( -23.10) >DroYak_CAF1 19963 98 + 1 -------------------GAUGGCGCACACUUACGGGUUAAAUUAUAUCAAGCAGAUGCAAGUGCCAUUAC---AUCCUUGUAAUUGCCAAAAUAAUGGGAAUUAUGCGUAUGAGAAAG -------------------((((((((.........(((........)))..((....))..)))))))).(---((.(.(((((((.(((......))).))))))).).)))...... ( -23.10) >DroAna_CAF1 12346 118 + 1 CAGAAGACAGGAGCUGGAGAAUGGC--AUACCAGCGGCUUAAAUAAUAUCAGACAUAUGCAAUUGCCAUUACAAUAUCCUUGUAAUUGCCAAAAUAAUGGCAAUUAUGCCUAUGAGAAAG ........(((((((((........--...)))))(((.......((((.....))))......))).........)))).((((((((((......))))))))))............. ( -27.32) >consensus ___________________AAUGGCACACACUUACGGGUUAAAUAAUAUCAAGCAUAUGCAAGUGCCAUUAC___AUCCUUGUAAUUGCCAAAAUAAUGGGAAUUAUGCGUAUGAGAAAG ...................((((((((.........(((........)))..((....))..))))))))...........((((((.(((......))).))))))............. (-16.40 = -17.02 + 0.63)
Location | 7,840,053 – 7,840,151 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.11 |
Mean single sequence MFE | -23.42 |
Consensus MFE | -14.16 |
Energy contribution | -15.23 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.95 |
Structure conservation index | 0.60 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7840053 98 - 22224390 CUUUCUCAUACGCAUAAUUCCCAUUAUUUUGGCAAUUACAAGGAU---GUAAUGGCACUCGCAUAUGCUUGAUAUUAUUUAACCCGUAAGUGUGUGCCAUC------------------- ........(((((.(((((.(((......))).)))))....).)---)))(((((((.(((.((((.((((......))))..)))).))).))))))).------------------- ( -22.40) >DroEre_CAF1 25381 98 - 1 CUUUCUCAUACGCAUAAUUCCCAUUAUUUUGGCAAUUACAAGGAU---GUAAUGGCACUUGCAUAUGCUUGAUAUUAUUUAACCCGUAAGUGUGUGCCAUU------------------- ......(((.(...(((((.(((......))).)))))...).))---).((((((((.(((.((((.((((......))))..)))).))).))))))))------------------- ( -19.90) >DroYak_CAF1 19963 98 - 1 CUUUCUCAUACGCAUAAUUCCCAUUAUUUUGGCAAUUACAAGGAU---GUAAUGGCACUUGCAUCUGCUUGAUAUAAUUUAACCCGUAAGUGUGCGCCAUC------------------- ..........(((((((((.(((......))).)))).(((((((---((((......)))))))..))))....................))))).....------------------- ( -18.10) >DroAna_CAF1 12346 118 - 1 CUUUCUCAUAGGCAUAAUUGCCAUUAUUUUGGCAAUUACAAGGAUAUUGUAAUGGCAAUUGCAUAUGUCUGAUAUUAUUUAAGCCGCUGGUAU--GCCAUUCUCCAGCUCCUGUCUUCUG ..........(((.(((((((((......)))))))))...((((((((((((....)))))).))))))............)))(((((...--........)))))............ ( -33.30) >consensus CUUUCUCAUACGCAUAAUUCCCAUUAUUUUGGCAAUUACAAGGAU___GUAAUGGCACUUGCAUAUGCUUGAUAUUAUUUAACCCGUAAGUGUGUGCCAUC___________________ ......(((((((.(((((.(((......))).)))))...((.....((((((.((...((....)).)).)))))).....))....)))))))........................ (-14.16 = -15.23 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:52 2006