Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,834,828 – 7,834,926 |
Length | 98 |
Max. P | 0.999444 |
Location | 7,834,828 – 7,834,926 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 65.05 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -10.63 |
Energy contribution | -11.75 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.28 |
Mean z-score | -2.62 |
Structure conservation index | 0.48 |
SVM decision value | 2.95 |
SVM RNA-class probability | 0.997887 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7834828 98 + 22224390 CUUUUACUCAGCCCUAUGAUGUGGAGCAAUAUACCUCACCGCUCCACU---------AACAUUUGUUUCCAAUGUUUUCUAAG------CUGAUUUUUGGGCAAUAAUAGCCA .......(((((........(((((((.............))))))).---------((((((.......))))))......)------))))......(((.......))). ( -23.22) >DroSim_CAF1 16073 101 + 1 CUUUUACUUAGUCCUAUGAUGUGGAGCACUGUAACUGACCGCUCCACUGAGAA------CAUAUGUUUCCAAUAUUUUCUAAA------CUGAUUAUUGGACAAUAAUAACCA ..........((((.((((((((((((.............)))))))..((((------.((((.......)))).))))...------...))))).))))........... ( -23.92) >DroEre_CAF1 18534 101 + 1 CUUUU-----------UGUCUUGGGGCAUUGAAACUCACCGCUCCCGUGACAAUAGUAACAUUUGUUUCCGUUAUUU-CUAAUUAUUUCUUAGUUAUAAGACAAAAAUAAUCA .((((-----------(((((((((((..((.....))..)))))((.(((((.........)))))..))......-.((((((.....)))))).))))))))))...... ( -19.70) >consensus CUUUUACU_AG_CCUAUGAUGUGGAGCAAUGUAACUCACCGCUCCACUGA_AA____AACAUUUGUUUCCAAUAUUUUCUAAA______CUGAUUAUUGGACAAUAAUAACCA ..........((((.((((((((((((.............)))))))................((....)).....................))))).))))........... (-10.63 = -11.75 + 1.12)
Location | 7,834,828 – 7,834,926 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 65.05 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -12.50 |
Energy contribution | -14.83 |
Covariance contribution | 2.34 |
Combinations/Pair | 1.13 |
Mean z-score | -3.39 |
Structure conservation index | 0.45 |
SVM decision value | 3.61 |
SVM RNA-class probability | 0.999444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7834828 98 - 22224390 UGGCUAUUAUUGCCCAAAAAUCAG------CUUAGAAAACAUUGGAAACAAAUGUU---------AGUGGAGCGGUGAGGUAUAUUGCUCCACAUCAUAGGGCUGAGUAAAAG .(((.......)))......((((------(((....(((((((....).))))))---------.(((((((((((.....)))))))))))......)))))))....... ( -34.40) >DroSim_CAF1 16073 101 - 1 UGGUUAUUAUUGUCCAAUAAUCAG------UUUAGAAAAUAUUGGAAACAUAUG------UUCUCAGUGGAGCGGUCAGUUACAGUGCUCCACAUCAUAGGACUAAGUAAAAG ...(((((...((((.........------....((.(((((((....)).)))------)).)).((((((((.(.......).))))))))......))))..)))))... ( -27.00) >DroEre_CAF1 18534 101 - 1 UGAUUAUUUUUGUCUUAUAACUAAGAAAUAAUUAG-AAAUAACGGAAACAAAUGUUACUAUUGUCACGGGAGCGGUGAGUUUCAAUGCCCCAAGACA-----------AAAAG ......((((((((((........((......(((-.((((..(....)...)))).)))...))..(((.(((.((.....)).))))))))))))-----------)))). ( -22.80) >consensus UGGUUAUUAUUGUCCAAUAAUCAG______AUUAGAAAAUAUUGGAAACAAAUGUU____UU_UCAGUGGAGCGGUGAGUUACAAUGCUCCACAUCAUAGG_CU_AGUAAAAG ...........((((............................(....).................((((((((.((.....)).))))))))......)))).......... (-12.50 = -14.83 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:50 2006