Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,834,465 – 7,834,561 |
Length | 96 |
Max. P | 0.901080 |
Location | 7,834,465 – 7,834,561 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 74.40 |
Mean single sequence MFE | -31.78 |
Consensus MFE | -15.56 |
Energy contribution | -16.48 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.18 |
Mean z-score | -2.06 |
Structure conservation index | 0.49 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7834465 96 + 22224390 GAAAAGACCAAAGCAGGACCAAGUCCU-GCGCCCAACAAGUGGAUGGCCGACCUG-------ACCCCGCCAAACGUACAUAGCUCGUUAGGUGGAAUAGGAAAA .....(.(((..(((((((...)))))-))..(((.....))).))).)..((((-------...(((((.((((.........)))).)))))..)))).... ( -31.10) >DroPse_CAF1 22281 79 + 1 GCAGGGGCCA----GGGAUCUGGUCCGGGCACCCAACAAGUGGAUGGAC--------------CCCUACCAAACGG----UGCUCGUUAGCGGUAAUGGGU--- ((..((((((----(....)))))))(((((((.......(((.(((..--------------..))))))...))----)))))....))..........--- ( -29.80) >DroSec_CAF1 10380 89 + 1 AAAAAGACCAAAGCAGGACGAAGUCCU-GCGCCCAACAAGUGGAUGGUCGACCUG-------ACCCCGCCAAACGU----UGCUCGUUAGGUGGAAUAAGG--- .....(((((..(((((((...)))))-))..(((.....))).)))))..(((.-------...(((((.((((.----....)))).)))))....)))--- ( -35.90) >DroSim_CAF1 15718 92 + 1 GAAAAGACCAAAGCAGGACCAAGUCCU-GCGCCCAACAAGUGGAUGGCCGACCUG-------ACCCCGCCAAACGU----UGCUCGUUAGGUGGAAUAAGAGCA .....(.(((..(((((((...)))))-))..(((.....))).))).)(..((.-------...(((((.((((.----....)))).)))))....))..). ( -29.30) >DroEre_CAF1 18206 80 + 1 CA-------GGACCAGGACCAAGUCCU-GCGCCCAACAAGUGGAUGGCCGACCUG-------ACCCCGCCAAACGU----GGCUCGUUAGGUGGA--AAGG--- ((-------((..((((((...)))))-)((.(((.(.....).))).)).))))-------...(((((.((((.----....)))).))))).--....--- ( -28.30) >DroYak_CAF1 14717 96 + 1 CAAAAGACCGAAGCAGGACCAAGUCCU-GUGCCCAACAAGUGGAUGGUCGACCUGCGGGGUCAGGCCGCCAAACGU----GGCUCGUUAGGUGGAGCAAGA--- .....(((((..(((((((...)))))-))..(((.....))).)))))((((.....))))...(((((.((((.----....)))).))))).......--- ( -36.30) >consensus GAAAAGACCAAAGCAGGACCAAGUCCU_GCGCCCAACAAGUGGAUGGCCGACCUG_______ACCCCGCCAAACGU____UGCUCGUUAGGUGGAAUAAGA___ .......(((..(((((((...))))).))..(((.....))).)))..................(((((.((((.........)))).))))).......... (-15.56 = -16.48 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:48 2006