Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,827,672 – 7,827,765 |
Length | 93 |
Max. P | 0.500000 |
Location | 7,827,672 – 7,827,765 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.37 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -20.06 |
Energy contribution | -20.87 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.09 |
Mean z-score | -1.42 |
Structure conservation index | 0.69 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7827672 93 + 22224390 CAUCAGCA---CCAUGAACGGCCA------GGGCUGCGAGCUGGGCCACAGCAAUGGCGACAUCAUCUCACAGAAUCAACAGAAGGGAUGGUGGACCAUCGG ...((((.---((.((......))------))))))(((((((.....))))..(((...(((((((((...............)))))))))..)))))). ( -29.36) >DroVir_CAF1 2 82 + 1 --------------UGAACGGCCA------GGGCUGUGAGCUGGGCCACAGCAAUGGGGACAUUAUAUCACAGAAUCAACAGAAGGGCUGGUGGACCAUCGG --------------....(.((((------(..((((((((((.....))))((((....))))...))))))..((....))....))))).)........ ( -27.30) >DroGri_CAF1 2 82 + 1 --------------UGAACGGCCA------GGGCUGUGAGCUGAACCACAGCAAUGGCGACAUCAUCUCACAGAACCAACAGAAGGGCUGGUGGACCAUCGG --------------....((((((------..((((((........))))))..))))..(((((.(((...............))).)))))......)). ( -25.46) >DroWil_CAF1 14733 96 + 1 CAUAAGCACCACCAUGAACGGCCA------AGGCUGUGAGUUAAAUCACAGCAAUGGUGACAUUAUAUCACAGAACCAACAGAAGGGCUGGUGGACCAUUGG ........((((((......(((.------..(((((((......)))))))((((....)))).....................)))))))))........ ( -29.60) >DroMoj_CAF1 2 82 + 1 --------------UGAACGGCCA------GAGCUGUGAGCUGGGCCACAGCAAUGGGGACAUCAUCUCACAGAACCAACAGAAGGGCUGGUGGACCAUCGG --------------....(.((((------(..(((((((.(((.((.((....)).))...))).)))))))..((.......)).))))).)........ ( -27.60) >DroAna_CAF1 9 99 + 1 CAUCAGCA---CCAUGAACGGCCAGGGCCAGGGCUGCGAGCUGGGCCACAGCAACGGGGACAUCAUCUCACAGAACCAACAGAAGGGAUGGUGGACCAUCGG ...((((.---((......(((....))).))))))(((((((.....))))....((..(((((((((...............)))))))))..)).))). ( -35.16) >consensus ______________UGAACGGCCA______GGGCUGUGAGCUGGGCCACAGCAAUGGGGACAUCAUCUCACAGAACCAACAGAAGGGCUGGUGGACCAUCGG ...................((((..........((((((((((.....)))).(((....)))....)))))).((((.(......).)))))).))..... (-20.06 = -20.87 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:41 2006