Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 966,851 – 966,952 |
Length | 101 |
Max. P | 0.989602 |
Location | 966,851 – 966,952 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 75.22 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -15.27 |
Energy contribution | -15.27 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.71 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 966851 101 - 22224390 UAUCAAAUAAACUGA-------------AUACUGAAAACUGAAAACUAAAGCAAAGUGUGAUAAAAUGUCAUUGAAAUGUCAGUUCAAUGAGGUGGGU-----GGCCUUUAAGCGGGUA ...............-------------................(((...((((((.((.((...((.((((((((.......)))))))).))..))-----.))))))..)).))). ( -18.00) >DroSec_CAF1 49809 86 - 1 UAUCAAA---------------------------AAAACUGAAAACUAAAGCAAAGUGUGAUA-AAUGUCAUUGAAAUGUCAGUUCAAUGAGGUGGGU-----GGCCUUUAAGCGGGUA .......---------------------------..........(((...((((((.((.((.-.((.((((((((.......)))))))).))..))-----.))))))..)).))). ( -18.80) >DroYak_CAF1 54282 119 - 1 UUUCAGAAAACUGAAAACGAAAAACUGAAAACGCAGAACUGAAAACUAAAGCAAAGUGUGAUAAAAUGUCAUUGAAGUGUCAGUUCAAUGAGGUGGGUGAGAUGGCCUUAAAGCGGGUA ((((((....))))))...............(((.(((((((..(((....((....(((((.....))))))).))).)))))))..((((((.(......).))))))..))).... ( -27.70) >consensus UAUCAAA_AA____A_____________A_AC__AAAACUGAAAACUAAAGCAAAGUGUGAUAAAAUGUCAUUGAAAUGUCAGUUCAAUGAGGUGGGU_____GGCCUUUAAGCGGGUA ............................................(((...((.............((.((((((((.......)))))))).))((((......))))....)).))). (-15.27 = -15.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:56 2006