Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,815,221 – 7,815,311 |
Length | 90 |
Max. P | 0.519399 |
Location | 7,815,221 – 7,815,311 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 95.05 |
Mean single sequence MFE | -12.65 |
Consensus MFE | -12.61 |
Energy contribution | -12.43 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.29 |
Structure conservation index | 1.00 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7815221 90 - 22224390 CGUCACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAUAUAUAUCUCUGGGAAUAUCUGGAAUAUUU--UUUGGCCAACAAAUUUCUCACA ..................(((((((((.....))))).........((..(......)..))......--..))))................ ( -12.40) >DroSec_CAF1 17817 90 - 1 CGUUACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAUAUAUAUCUCUGGGAAUAUCUGGAAUAUUU--UUUGGCCAACAAAUUUCUCACA ..................(((((((((.....))))).........((..(......)..))......--..))))................ ( -12.40) >DroEre_CAF1 18856 89 - 1 CGUCACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAU--AUACCUCUGGGAAUAUCUAGAAUACUUU-UUUGGCCAACAAAUUUCUCACA ..................(((((((((.....)))))..--.....(((((......))))).......-..))))................ ( -13.40) >DroYak_CAF1 18878 90 - 1 CGUCACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAU--AUAUCUCUGGGAAUAUCUGGAAUAUUUUUUUUGGCCAACAAAUUUCUCACA ..................(((((((((.....)))))..--.....((..(......)..))..........))))................ ( -12.40) >consensus CGUCACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAU__AUAUCUCUGGGAAUAUCUGGAAUAUUU__UUUGGCCAACAAAUUUCUCACA ..................(((((((((.....))))).........(((((......)))))..........))))................ (-12.61 = -12.43 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:37 2006