Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,814,365 – 7,814,471 |
Length | 106 |
Max. P | 0.718105 |
Location | 7,814,365 – 7,814,471 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 93.02 |
Mean single sequence MFE | -40.47 |
Consensus MFE | -34.33 |
Energy contribution | -34.20 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.69 |
Structure conservation index | 0.85 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7814365 106 + 22224390 GCAUCUCCACCAGAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGCGUCUUUCGGGUGGCCAGCUGCAGUCUCGGAUGCAGUUUUUGGC---UGCAGCUGCAAUU ......(((((...((((((((((...((...))....)))))))))).((.....))))))).(((((((((((..((((...))))..)))---))))))))..... ( -44.30) >DroSec_CAF1 16953 106 + 1 GCAUCUCCACCGAAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGCGUCUUUCGGGUGGCCAGCUGCAGUCUCGGAUGCAGUUUUUGGC---UGCAGCUCCAAUU ......(((((...((((((((((...((...))....)))))))))).((.....)))))))..((((((((((..((((...))))..)))---)))))))...... ( -41.40) >DroEre_CAF1 17970 109 + 1 GCAUCUCCACCAAAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGUGUCUUUCGGGUGGCCAGCUGCAGUUUCGGAUGCAGUUUUGGGCUUUUGCUUCUGCAAUU ((....(((((...((((((((((...((...))....)))))))))).((.....)))))))(((((((((........))))))..)))))..((((....)))).. ( -38.00) >DroYak_CAF1 18011 106 + 1 GCAUCUCUACCAAAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGCGUCUCUCGGGUGGCCAGCUGCAGUUUCGGAUGCACUUUUGGGC---UGCAUCUGCAAUU (((.(((((((...((((((((((...((...))....)))))))))).((.....)))))))..)).)))((((.((((((((((....)).---)))))))).)))) ( -38.20) >consensus GCAUCUCCACCAAAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGCGUCUUUCGGGUGGCCAGCUGCAGUCUCGGAUGCAGUUUUGGGC___UGCAGCUGCAAUU (((....((((...((((((((((...((...))....)))))))))).((.....))))))((((((((((........)))))))...)))...))).......... (-34.33 = -34.20 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:36 2006