Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,796,797 – 7,796,917 |
Length | 120 |
Max. P | 0.548796 |
Location | 7,796,797 – 7,796,917 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -31.60 |
Consensus MFE | -28.00 |
Energy contribution | -28.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.89 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7796797 120 - 22224390 CAUAUCCAAAAUCAACAUAGUAAGUCACAACUCUUACCGUGAACAAGCGUUCGUACUCGCGCGGCAAUUCAAGAAGUCGCGGCUGCUGCCACAACGAAUGCUGAUUGAUGAGCACCAAUU ..((((...((((..((..(((((........)))))..))....(((((((((......(((((..........)))))(((....)))...))))))))))))))))).......... ( -34.00) >DroSim_CAF1 281 120 - 1 CCUAUCCAAAAUCCACAUAGUAAAUAACAACUCUCACCGUGAACAAGCGUUCGUACUCGCGCGGCAAUUCAAGAAGUCGCGGCUGCUGCCACAACGAAUGCUGAUUGAUGAGCACCAAUU ..............................((((((..(....).(((((((((......(((((..........)))))(((....)))...)))))))))...))).)))........ ( -28.10) >DroYak_CAF1 281 120 - 1 CCCAUCCCAAAACAACGUAGUAAAUAACAAAGCUCACCGUGAACAAGCGUUCGUACUCGCGCGGCAAUUCGAGAAGUCGCGGCUGCUGCCACAACGAAUGCUGAUUGAUGAGCACCAAUU ...............................(((((.((......(((((((((......(((((..........)))))(((....)))...)))))))))...)).)))))....... ( -32.70) >consensus CCUAUCCAAAAUCAACAUAGUAAAUAACAACUCUCACCGUGAACAAGCGUUCGUACUCGCGCGGCAAUUCAAGAAGUCGCGGCUGCUGCCACAACGAAUGCUGAUUGAUGAGCACCAAUU .....................................(((.((..(((((((((......(((((..........)))))(((....)))...)))))))))..)).))).......... (-28.00 = -28.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:28 2006