Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,791,508 – 7,791,622 |
Length | 114 |
Max. P | 0.998692 |
Location | 7,791,508 – 7,791,622 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 76.47 |
Mean single sequence MFE | -27.14 |
Consensus MFE | -18.34 |
Energy contribution | -20.34 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.92 |
Structure conservation index | 0.68 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940626 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7791508 114 + 22224390 UGUUAUACCCUUGCAGCAU---A-CAAGCGAUUAGAUCUAUUAUCUAUGGUGCAAACAGCUCACCAAAUUGGCAAUGCCCACUGCAAGGGUACACAAAAGAAGAGCUAAAGAGCGGUC (((..(((((((((((...---.-........(((((.....)))))(((.(((....((.((......))))..))))))))))))))))).)))........(((....))).... ( -30.50) >DroSec_CAF1 9245 102 + 1 UGUUAUACCCUUGCAGCA----------------GAUCUAAUAACUAUGGUGCAAACAGCUCACCAAAUUGGCAAUGCCCACUGCAAGGGUACGCAAAAGAAGAGCUAAGGAGCGGUC (((..(((((((((((..----------------.............(((((.........)))))....(((...)))..))))))))))).)))........(((....))).... ( -28.60) >DroSim_CAF1 17098 102 + 1 UGUUAUACCCUUGCAGCA----------------GAUCCAAUAACUAUGGUGCAAACAGCUCACCAAAUUGGCAAUGCCCACUGCAAGGGUACGCAAAAGAAGAGCUAAAGAGCGGUC (((..(((((((((((((----------------...(((((.....(((((.........))))).)))))...)))....)))))))))).)))........(((....))).... ( -29.60) >DroEre_CAF1 12755 86 + 1 UGUUAUACCCUUGCAGUAC--------------------------------ACAAACAGCUCACCAAACUAGCAAUGCCCACUGCAAGAGUACACAAAAAAAGAGCUAACAACCGGGC (((..(((.((((((((..--------------------------------.((....(((.........)))..))...)))))))).))).)))........(((........))) ( -14.20) >DroYak_CAF1 12147 117 + 1 UGUUAUACCCAGGUUGUACCGUAGCUUUCGAUUAGAUCUAUUAACUAUGGUACAAACGGCUCACCAAUGUGGCAAUGCCCACUGCAAGGGUACACAAA-AAAGAGCUGAAGAGCGGAC ........((...(((((((((((.....(((...)))......))))))))))).((((((.....((((....(((((.......)))))))))..-...))))))......)).. ( -32.80) >consensus UGUUAUACCCUUGCAGCA________________GAUCUAAUAACUAUGGUGCAAACAGCUCACCAAAUUGGCAAUGCCCACUGCAAGGGUACACAAAAGAAGAGCUAAAGAGCGGUC (((..(((((((((((...............................(((((.........)))))....(((...)))..))))))))))).)))........(((....))).... (-18.34 = -20.34 + 2.00)
Location | 7,791,508 – 7,791,622 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 76.47 |
Mean single sequence MFE | -34.18 |
Consensus MFE | -25.08 |
Energy contribution | -25.12 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.21 |
Mean z-score | -2.82 |
Structure conservation index | 0.73 |
SVM decision value | 3.19 |
SVM RNA-class probability | 0.998692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7791508 114 - 22224390 GACCGCUCUUUAGCUCUUCUUUUGUGUACCCUUGCAGUGGGCAUUGCCAAUUUGGUGAGCUGUUUGCACCAUAGAUAAUAGAUCUAAUCGCUUG-U---AUGCUGCAAGGGUAUAACA ....(((....)))..........(((((((((((((((.(((..((.....(((((.........)))))(((((.....)))))...)).))-)---.)))))))))))))))... ( -37.50) >DroSec_CAF1 9245 102 - 1 GACCGCUCCUUAGCUCUUCUUUUGCGUACCCUUGCAGUGGGCAUUGCCAAUUUGGUGAGCUGUUUGCACCAUAGUUAUUAGAUC----------------UGCUGCAAGGGUAUAACA ....(((....)))...........((((((((((((..(((.(..((.....))..)((.....)).............).))----------------..)))))))))))).... ( -33.70) >DroSim_CAF1 17098 102 - 1 GACCGCUCUUUAGCUCUUCUUUUGCGUACCCUUGCAGUGGGCAUUGCCAAUUUGGUGAGCUGUUUGCACCAUAGUUAUUGGAUC----------------UGCUGCAAGGGUAUAACA ....(((....)))...........((((((((((((..((.....(((((.(((((.........))))).....))))).))----------------..)))))))))))).... ( -36.40) >DroEre_CAF1 12755 86 - 1 GCCCGGUUGUUAGCUCUUUUUUUGUGUACUCUUGCAGUGGGCAUUGCUAGUUUGGUGAGCUGUUUGU--------------------------------GUACUGCAAGGGUAUAACA ........................(((((((((((((((.(((..((.(((((...))))))).)))--------------------------------.)))))))))))))))... ( -29.30) >DroYak_CAF1 12147 117 - 1 GUCCGCUCUUCAGCUCUUU-UUUGUGUACCCUUGCAGUGGGCAUUGCCACAUUGGUGAGCCGUUUGUACCAUAGUUAAUAGAUCUAAUCGAAAGCUACGGUACAACCUGGGUAUAACA ....(((....))).....-....(((((((........(((.(..((.....))..))))(.(((((((.(((((....(((...)))...))))).))))))).).)))))))... ( -34.00) >consensus GACCGCUCUUUAGCUCUUCUUUUGUGUACCCUUGCAGUGGGCAUUGCCAAUUUGGUGAGCUGUUUGCACCAUAGUUAAUAGAUC________________UGCUGCAAGGGUAUAACA ....(((....)))...........(((((((((((((((((.(..((.....))..))))(....).................................)))))))))))))).... (-25.08 = -25.12 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:25 2006