Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,768,635 – 7,768,741 |
Length | 106 |
Max. P | 0.896700 |
Location | 7,768,635 – 7,768,741 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.15 |
Mean single sequence MFE | -26.32 |
Consensus MFE | -22.01 |
Energy contribution | -22.07 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.03 |
Structure conservation index | 0.84 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7768635 106 - 22224390 AAGCUUUAUCAUUGGUUAACCAAAAUAUGUAUGUAU--------------AUACAUGUAUCAAUGUCGAUAAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUACGCACAAGU ..((((((((.((((....)))).((((((((....--------------)))))))).........)))))))).....(((((....))))).........(((((...))))).... ( -24.50) >DroSec_CAF1 2767 106 - 1 AAGCUUUUUCAUUGGUUAACCAAAAUAUGUAUGUAU--------------AUACAUGUAUCAAUGUCGAUAAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUGCGCACAAGU ..((...((((((((....))...((((((((....--------------)))))))).....(((((((...))))))).)))))).)).............(((((...))))).... ( -24.50) >DroSim_CAF1 2798 106 - 1 AAGCUUUUUCAUUGGUUAACCAAAAUAUGUAUGUAU--------------AUACAUGUAUCAAUGUCGAUAAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUGCGCACAAGU ..((...((((((((....))...((((((((....--------------)))))))).....(((((((...))))))).)))))).)).............(((((...))))).... ( -24.50) >DroYak_CAF1 2845 120 - 1 AAGCUUUUUCGUUGGUAAACCAAAAUAUGUAUAUAUGUGUAUGUAUGGGCAUACAUGUAUCAAUGUCGAUGAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUGCGCACAAGU ..((((....((((((((........((((((.(((((((((((....)))))))))))(((.(((((((...)))))))...)))))))))))))))..)).(((((...))))))))) ( -31.80) >consensus AAGCUUUUUCAUUGGUUAACCAAAAUAUGUAUGUAU______________AUACAUGUAUCAAUGUCGAUAAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUGCGCACAAGU ..((...((((((((....)))).((((((((..................)))))))).....(((((((...)))))))...)))).)).............(((((...))))).... (-22.01 = -22.07 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:13 2006