Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 965,535 – 965,648 |
Length | 113 |
Max. P | 0.996693 |
Location | 965,535 – 965,648 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 78.76 |
Mean single sequence MFE | -34.90 |
Consensus MFE | -22.14 |
Energy contribution | -23.60 |
Covariance contribution | 1.46 |
Combinations/Pair | 1.16 |
Mean z-score | -3.03 |
Structure conservation index | 0.63 |
SVM decision value | 2.73 |
SVM RNA-class probability | 0.996693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 965535 113 + 22224390 UUAUUUAUCGGUUAAUAUAUGUAUAUAACGUAUAUGUAUAUGUACGAUCGCGCUGAUCGGUCAGUCAGAUGGGUCAGAUCGUUUGGAUCGGUCUGCAUGUGGACAUGUGGAUA ........(((((..((((((((((((.....))))))))))))(((.((..((((((.(((.....))).))))))..)).))))))))(((..((((....))))..))). ( -37.90) >DroSec_CAF1 48398 113 + 1 UUAUUUAUCGGUUAAUAUAUGCAUUUAACGUAUAUGUAUAUGUACGACCGCGAUGAUCGGUCGGUCAGAUGGGUCAGAUCGUUUGGAUCGGUCUGCAUGUGGACAUGUGGAUA ........(((((.((((((((((.........))))))))))..)))))...(((((.(((.....))).)))))((((.....)))).(((..((((....))))..))). ( -36.60) >DroYak_CAF1 52101 96 + 1 UUAUUUAUCGGUUUAUAUAUGCAC---------ACCUAUGCAUACGAUCGCGCUGAUCGA----CCAGAUGGGUUAGAUGGGUUAGAUCGGUCUGCAUAUCG----GUGGAUA .....((((.((........)).(---------(((((((((..(((((..(((.(((((----((.....)))).))).)))..)))))...))))))..)----))))))) ( -30.20) >consensus UUAUUUAUCGGUUAAUAUAUGCAU_UAACGUAUAUGUAUAUGUACGAUCGCGCUGAUCGGUC_GUCAGAUGGGUCAGAUCGUUUGGAUCGGUCUGCAUGUGGACAUGUGGAUA .(((((((.......((((((((......((((((....))))))((((....(((((.(((.....))).)))))((((.....)))))))))))))))).....))))))) (-22.14 = -23.60 + 1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:54 2006