| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 124,406 – 124,496 |
| Length | 90 |
| Max. P | 0.730581 |
| Location | 124,406 – 124,496 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 85.61 |
| Mean single sequence MFE | -24.54 |
| Consensus MFE | -17.33 |
| Energy contribution | -17.95 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 124406 90 - 22224390 ACCUAGA---UGCAAAUUAAAUAAUAGCAUCGCACAAAGUCACAAGUUGCAAGUUGGUCUGAAGUUGCUAUUGUGACUGGCAAUGGUGCAAAU .....((---(((.............)))))((((..((((((((...((((.((......)).))))..)))))))).......)))).... ( -27.72) >DroSec_CAF1 12499 92 - 1 -CCUGGAACCUGCAAAUUAUAUAAUAGUAUCGCACAACGUCACAAGUUGCAAGUUGGUCUGAAGUUGCUAUUGUGACCGGCAAUGGUGAGGAU -(((...((((((.............((........))(((((((...((((.((......)).))))..)))))))..)))..))).))).. ( -22.10) >DroEre_CAF1 18912 90 - 1 CACCAGA---UGCAAAUCAAAUAAUAGCAUCGCACAACGUCACAAGUUGCAAGUUGGGCUGAAGUUGCUAUUGUGACCGGCAAUGUUGCGGAU ..((.((---(((.............)))))(((((.((((((((...((((.((......)).))))..)))))).))....)).))))).. ( -25.32) >DroYak_CAF1 15430 85 - 1 UCCCAGA---UGCAAAUCCAAUAA-----CCGCACAACGUCACAAGUUGCAAGUUGGACUGAAGUUGCUAUUGUGACCGGCAAUGUUGCGGAU .....((---(....)))......-----(((((((.((((((((...((((.((......)).))))..)))))).))....)).))))).. ( -23.00) >consensus _CCCAGA___UGCAAAUCAAAUAAUAGCAUCGCACAACGUCACAAGUUGCAAGUUGGUCUGAAGUUGCUAUUGUGACCGGCAAUGGUGCGGAU .............................((((((...(((((((...((((.((......)).))))..)))))))........)))))).. (-17.33 = -17.95 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:47 2006