Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,757,216 – 7,757,316 |
Length | 100 |
Max. P | 0.732157 |
Location | 7,757,216 – 7,757,316 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.54 |
Mean single sequence MFE | -29.14 |
Consensus MFE | -19.76 |
Energy contribution | -20.16 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.68 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7757216 100 - 22224390 CCCAUCUCGCCGAUUAGCCGAAGGGCGCGCCUAUCGAUGACCAAUCGAUAGCUA---UUGCCGUUAUCGACACAUCCAAU-UCAAAUUCAAAUUGGA----------------UCCGAAA ......(((.((((..(((....)))(((.((((((((.....))))))))...---.)))....))))....(((((((-(........)))))))----------------).))).. ( -27.70) >DroSec_CAF1 6378 116 - 1 CCCAUCUCGCCGAUUAGCCGAAGGGCGAGCCUAUCGAUGACCAAUCGAUAGCUA---UAGCCGUUAUCGACACAGCCAAU-UCAAAUUCAAAUUGGAUUUCGAAAAUUAUACAUCCGAAA ......(((...........((.(((.(((.(((((((.....)))))))))).---..))).)).((((.....(((((-(........))))))...))))............))).. ( -27.40) >DroSim_CAF1 5893 116 - 1 CCCAUCUCGCCGAUUAGCCGAAGGGCGAGCCUAUCGAUGACCAAUCGAUAGCUA---UAGCCGUUAUCGACACAGCCAAU-UCAAAUUCAAAUUGGAUUUCGAAAAUUAUACAUCCGAAA ......(((...........((.(((.(((.(((((((.....)))))))))).---..))).)).((((.....(((((-(........))))))...))))............))).. ( -27.40) >DroEre_CAF1 6575 119 - 1 CCCAUCUCGCCGAUAGGCAGAAGGGCACGCCUAUCGAUGACCAAUCGAUAGUUUUUUUUGUCGUUAUCGACAUAGCCAAU-UCAAAUUCAAACUGGAUUUCGAAAAGGAUAAUUCCGAAA (((.(((.(((....)))))).)))...((((((((((.....)))))))).......(((((....)))))..))...(-((((((((.....)))))).)))..(((....))).... ( -34.90) >DroYak_CAF1 6535 117 - 1 CCCAUCUCGCCGAUUAGCCAAAGGGCACGCCUAUCGAUGACGGAUCGAUAGUUG---UUGUCGUUAUCGACACAGCCAAUGUCAAAUUCAAAUUGGAUUUCGAAAAUCCUACAUCCGAAA ......(((.((((..(((....)))......)))).)))(((((.((((((((---(.((((....)))))))))...))))...........(((((.....)))))...)))))... ( -28.30) >consensus CCCAUCUCGCCGAUUAGCCGAAGGGCGCGCCUAUCGAUGACCAAUCGAUAGCUA___UUGCCGUUAUCGACACAGCCAAU_UCAAAUUCAAAUUGGAUUUCGAAAAUUAUACAUCCGAAA ......(((.((((..(((....)))....((((((((.....))))))))..............))))......(((((...........)))))...................))).. (-19.76 = -20.16 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:02 2006