Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,754,914 – 7,755,009 |
Length | 95 |
Max. P | 0.570270 |
Location | 7,754,914 – 7,755,009 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -17.10 |
Consensus MFE | -10.77 |
Energy contribution | -12.30 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.04 |
Mean z-score | -1.68 |
Structure conservation index | 0.63 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7754914 95 + 22224390 AAGAAAGGGAAUUUCCAAAUUGCAAACACUCUACUUUCAAGUUUUCCAAUUUUGCAUUAACUGCCUAAAGGAAUACACUAUA--------------------UAUCUUUCCAAAA--- ..(((((((.....))........................((.((((......(((.....))).....)))).))......--------------------...))))).....--- ( -11.90) >DroSec_CAF1 3901 116 + 1 AAGAAAAGGAAUUUCUAAAUUGCAAACAC--UACUUUCAAGUUUUCCAAUUUUGCAUUGACCGCUUGAAGGAAUAAACUACACUAUACAAAGCCACCUUUGAAAUCUUUUCAAUAUGC ..(((((((....................--..(((((((((....((((.....))))...)))))))))................(((((....)))))...)))))))....... ( -19.70) >DroSim_CAF1 3420 116 + 1 AAGAAAAGGAAUUUCUAAAUUGCCAACAC--UACUUUCAAGUUUUCCAAUUUUGCAUUGACCGCUUGAAGGAAUAAACUACACUAUACAAAGCCACCUUUGAAAUCUUUUCAAUAUGC ..(((((((....................--..(((((((((....((((.....))))...)))))))))................(((((....)))))...)))))))....... ( -19.70) >consensus AAGAAAAGGAAUUUCUAAAUUGCAAACAC__UACUUUCAAGUUUUCCAAUUUUGCAUUGACCGCUUGAAGGAAUAAACUACACUAUACAAAGCCACCUUUGAAAUCUUUUCAAUAUGC ..(((((((........................(((((((((....((((.....))))...)))))))))................(((((....)))))...)))))))....... (-10.77 = -12.30 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:01 2006