Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,753,526 – 7,753,624 |
Length | 98 |
Max. P | 0.867456 |
Location | 7,753,526 – 7,753,624 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 87.04 |
Mean single sequence MFE | -16.12 |
Consensus MFE | -12.44 |
Energy contribution | -11.88 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.20 |
Mean z-score | -1.99 |
Structure conservation index | 0.77 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.867456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7753526 98 + 22224390 AUAAACUACCAUUCUUUUACUGUCAAAUUAAGCUUCAAAUUCGAAAUUCGAUAAGUAACCGAUAUUUAUCGAUAGGCAAAGGAUUACCCUCGCACAUA ..........(((((((..(((((.........(((......)))....((((((((.....)))))))))))))..))))))).............. ( -16.40) >DroSec_CAF1 2503 98 + 1 AUAAACUACCAUUCCUUUAUUGACAAAUUAAGCUUCAAGUUCAAAAUUCGAUAAGUAACCGAUACUUAUCGAUAGGCAAAGGAUUACCCUCCCACAUA ............((((((.((((...........)))).........((((((((((.....)))))))))).....))))))............... ( -16.50) >DroSim_CAF1 2026 98 + 1 AUAAACUACCAUUCCUUUAUUGACAAAUUAAGCUUCAAGUUCAAAAUUCGAUAAGUAACCGAUACUUAUCGAUAGGCAAAGGAUUACCCUCCCACAUA ............((((((.((((...........)))).........((((((((((.....)))))))))).....))))))............... ( -16.50) >DroEre_CAF1 2632 85 + 1 AUAAACUAUUAUUAUUUUACUAUCAAAUUAAGCUUCAAGUUCGAAAUUCGAUAAGUAACCGAUAUUUAUCGAUAGGCUAAGGAUU------------- ...................(((((...(..(((.....)))..).....((((((((.....)))))))))))))..........------------- ( -12.10) >DroYak_CAF1 2548 98 + 1 AUAAAGUACCAUUCUUUUACUGUCUAAUUAAGCUUCAAGUUCGAAAUUCGAUAAGUAACCGAUACUUAUCGAUAGGCAAAGGACUACCCUCCCGCAUU .....((.............((((((.(..(((.....)))..)...((((((((((.....))))))))))))))))..(((......))).))... ( -19.10) >consensus AUAAACUACCAUUCUUUUACUGUCAAAUUAAGCUUCAAGUUCGAAAUUCGAUAAGUAACCGAUACUUAUCGAUAGGCAAAGGAUUACCCUCCCACAUA .....................................(((((.....((((((((((.....))))))))))........)))))............. (-12.44 = -11.88 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:59 2006