Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,751,054 – 7,751,166 |
Length | 112 |
Max. P | 0.959823 |
Location | 7,751,054 – 7,751,166 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 85.36 |
Mean single sequence MFE | -39.85 |
Consensus MFE | -27.96 |
Energy contribution | -29.65 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.14 |
Mean z-score | -2.72 |
Structure conservation index | 0.70 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.959823 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7751054 112 - 22224390 GGUUGUGUUAUUUCUAGUGUACGUUUGCAUCUCCGGUUCGAUUUCCGUAGCCGGAAUGAAUCGGGGAUUGGGCUUGGGACAAGUGUGGGGAUGGGGAUGGGAAUUAAGACGA--- ..((((.(((.((((.((.(.(((((.(((((((((((((..(((((....))))))))))))))))).(.(((((...))))).)).))))).).)).)))).))).))))--- ( -36.70) >DroSec_CAF1 5 115 - 1 GGUUGUGUUAUUUCUAGUGUACGUUUGCAUCUCCGGUUCGAUUUCCGUAGCCGGAAUGGAGCGGGGAUUGGGCCUGGGACGGGUGUGGGGAUGGGGAUGGGAAUUAAGACGAUGA .(((((.(((.((((......(((((.(((((((((((((((..((((..((.....)).))))..))))))))....((....))))))))).))))))))).))).))))).. ( -43.50) >DroEre_CAF1 6 109 - 1 GGUUGUGUUAUUUCUAGUGUACGUGUGCAUCUCCGUAUCCGUUUCCGUAGCCGGAAUAGAACGGGGAUUGGGAU------GGGGAUGGGGAUCGGGAUGGGAAUUAAGACGAUGA .(((((.(((.((((......(((.(.(((((((((.(((((..((((............))))..).))))))------))))))).).).)).....)))).))).))))).. ( -36.10) >DroYak_CAF1 9 115 - 1 GGUUGUGUUAUUUCUAGUGUGCGUGUGCAACUCCGGAUCCAUUUCCGUAGCCGGAAUAGUACGGGGAUUGGGCUCGGCACGGAUAUGGGGAUGGGGAUGGGAGUCAAGACGAUGA .(((((.(((((((((...(((....))).(((((..(((((.(((((.(((((..((((......))))..).))))))))).)))))..))))).))))))).)).))))).. ( -43.10) >consensus GGUUGUGUUAUUUCUAGUGUACGUGUGCAUCUCCGGAUCCAUUUCCGUAGCCGGAAUAGAACGGGGAUUGGGCUUGGGACGGGUAUGGGGAUGGGGAUGGGAAUUAAGACGAUGA .(((((.(((.((((......(((((.(((((((((((((((..((((............))))..))))))))............))))))).))))))))).))).))))).. (-27.96 = -29.65 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:58 2006