Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,735,503 – 7,735,611 |
Length | 108 |
Max. P | 0.992317 |
Location | 7,735,503 – 7,735,611 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 98.77 |
Mean single sequence MFE | -20.20 |
Consensus MFE | -19.80 |
Energy contribution | -19.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.98 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7735503 108 + 22224390 CUUUUCUGCUGCUCCUGAUCCUUUUUACGGCGCCGCUCUUCCGCCAGUUCCACCUGCCUCUCCUCCGCUCGCUCCUCUCUCCUUAUACUUUCAUAAAGAGAGGGAUCC .......((.((.(((((......))).)).)).))......((.(((..................))).))(((.(((((.((((......)))).))))))))... ( -20.07) >DroSec_CAF1 5655 108 + 1 CUUUUCUGCUGCUCCUGAUCCUUCUUUCGGCGCCGCUCUUCCGCCAGUUCCACCUGCCUCUCCUCCGCUCGCUCCUCUCUCCUUAUACUUUCAUAAAGAGAGGGAUCC .......((.((.((.((........)))).)).))......((.(((..................))).))(((.(((((.((((......)))).))))))))... ( -20.27) >DroSim_CAF1 6265 108 + 1 CUUUUCUGCUGCUCCUGAUCCUUCUUUCGGCGCCGCUCUUCCGCCAGUUCCACCUGCCUCUCCUCCGCUCGCUCCUCUCUCCUUAUACUUUCAUAAAGAGAGGGAUCC .......((.((.((.((........)))).)).))......((.(((..................))).))(((.(((((.((((......)))).))))))))... ( -20.27) >consensus CUUUUCUGCUGCUCCUGAUCCUUCUUUCGGCGCCGCUCUUCCGCCAGUUCCACCUGCCUCUCCUCCGCUCGCUCCUCUCUCCUUAUACUUUCAUAAAGAGAGGGAUCC ................(((((.......((.((.((......))(((......)))..............)).)).(((((.((((......)))).)))))))))). (-19.80 = -19.80 + 0.00)
Location | 7,735,503 – 7,735,611 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 98.77 |
Mean single sequence MFE | -32.34 |
Consensus MFE | -32.34 |
Energy contribution | -32.34 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.30 |
Structure conservation index | 1.00 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7735503 108 - 22224390 GGAUCCCUCUCUUUAUGAAAGUAUAAGGAGAGAGGAGCGAGCGGAGGAGAGGCAGGUGGAACUGGCGGAAGAGCGGCGCCGUAAAAAGGAUCAGGAGCAGCAGAAAAG .((((((((((((((((....))))))))))).((.((..((........(.(((......))).)......)).)).)).......)))))................ ( -32.34) >DroSec_CAF1 5655 108 - 1 GGAUCCCUCUCUUUAUGAAAGUAUAAGGAGAGAGGAGCGAGCGGAGGAGAGGCAGGUGGAACUGGCGGAAGAGCGGCGCCGAAAGAAGGAUCAGGAGCAGCAGAAAAG .((((((((((((((((....))))))))))).((.((..((........(.(((......))).)......)).)).)).......)))))................ ( -32.34) >DroSim_CAF1 6265 108 - 1 GGAUCCCUCUCUUUAUGAAAGUAUAAGGAGAGAGGAGCGAGCGGAGGAGAGGCAGGUGGAACUGGCGGAAGAGCGGCGCCGAAAGAAGGAUCAGGAGCAGCAGAAAAG .((((((((((((((((....))))))))))).((.((..((........(.(((......))).)......)).)).)).......)))))................ ( -32.34) >consensus GGAUCCCUCUCUUUAUGAAAGUAUAAGGAGAGAGGAGCGAGCGGAGGAGAGGCAGGUGGAACUGGCGGAAGAGCGGCGCCGAAAGAAGGAUCAGGAGCAGCAGAAAAG .((((((((((((((((....))))))))))).((.((..((........(.(((......))).)......)).)).)).......)))))................ (-32.34 = -32.34 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:53 2006