Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,722,534 – 7,722,628 |
Length | 94 |
Max. P | 0.577998 |
Location | 7,722,534 – 7,722,628 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 81.77 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -18.17 |
Energy contribution | -19.32 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.36 |
Mean z-score | -1.52 |
Structure conservation index | 0.68 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7722534 94 - 22224390 CUUUACCAGUCGCGCCUUUUUAGCCGAUCACUUGGUUAGGCAUCGGAAACAUCGCAAUCAGCUGGUGAUUUUGGCUGAAAAGAUCGUCGACAAU ........((((((.(((((((((((((((((((((...((...(....)...)).))))...)))))))..))))))))))..)).))))... ( -32.20) >DroSec_CAF1 7261 94 - 1 CUUCACCAGUCGCGCCUUUUUAGCCGAUCACUUGGUUAGGCAUCGGAAACAUCGCAAUCAGCUGGUGAUUUUGGCCGAAAAGAUCGUCGACAAU ........((((((.(((((..((((((((((((((...((...(....)...)).))))...)))))))..)))..)))))..)).))))... ( -28.70) >DroSim_CAF1 5626 94 - 1 CUUCACCAGUCGUGCCUUUUUAGCCGAUCACUUGGUUAGGCAUCGGAAACAUCGCAAUCAGCUGGUGAUUUUGGCCGAAAAGAUCGUCGACAAU ..((((((((.((((((....((((((....)))))))))))).(....)..........))))))))..(((((.((.....))))))).... ( -28.10) >DroEre_CAF1 6996 94 - 1 CUUCACCAGUCGCGCCUUUUUGGCCGAUCACCUGGUUAGGCAUAGGAAACAUCGCAAUCGGCUGGUGAUUUUGGCCGAAAAGAUCAUCGAUAAU ........((((...(((((((((((((((((.((((..((...(....)...))....)))))))))))..)))))))))).....))))... ( -31.30) >DroYak_CAF1 7802 94 - 1 CUUCACCAGUCGCGCCUUUCUGGCCGCCCACCUGGUUGGGCAUAGGCACCAUCGCAAUCAGCUGUUGAUUUUGGGCGAAAAGAUCAUUGACAAU ........(((..(((.....)))((((((...(((.((((....)).)))))((.....)).........))))))...........)))... ( -25.00) >DroPer_CAF1 6710 94 - 1 AUUCACCAGUACCGCGUUUUUGGCCACCCAUCUCACUCAUCACAAGGAGCAUCGCCACCGAUUCAUCAUCCUCGCCGAGAAGAUCCUGGACAAC .....((((.....(.((((((((...........(((........))).((((....))))...........)))))))))...))))..... ( -16.00) >consensus CUUCACCAGUCGCGCCUUUUUAGCCGAUCACCUGGUUAGGCAUAGGAAACAUCGCAAUCAGCUGGUGAUUUUGGCCGAAAAGAUCGUCGACAAU ........((((...(((((((((((((((((.((((..((...(....)...))....)))))))))..)))))))))))).....))))... (-18.17 = -19.32 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:52 2006