Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,708,395 – 7,708,515 |
Length | 120 |
Max. P | 0.530830 |
Location | 7,708,395 – 7,708,515 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -36.17 |
Consensus MFE | -27.83 |
Energy contribution | -30.17 |
Covariance contribution | 2.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.34 |
Structure conservation index | 0.77 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7708395 120 + 22224390 GAUGAUGCUGACGUAAAAGUCGCGCCAUAAAAAUUCAUUGCCAAACGAGCCAAAGUAUUGCGGCAAUAGAUGGAGAUGAGGACGAGGAUGUGGCAGUGGCGGUGGCAGUGGCAGUGGAUG .(((.(((.(((......)))))).)))....(((((((((((.....((((..(((((((.(((.(...((..........))..).))).))))).))..))))..))))))))))). ( -38.40) >DroSim_CAF1 16253 120 + 1 GAUGAUGCUGACGUAAAAGUCGCGCCAUAAAAAUUCAUUGCCAAACGAGCCAAAGUAUUGCGGCAAAGGAUGGAGAUGAGGACGAGGAUGUGGCAGUGGUGGUGGCAGUGGCAGUGGAUG .(((.(((.(((......)))))).)))....(((((((((((.....((((.(.((((((.(((..(..(........)..).....))).)))))).)..))))..))))))))))). ( -38.00) >DroEre_CAF1 6011 120 + 1 GCUGAUGCUGACGUAAAAGUCGCGCCAUAAAAAUUCAUUGCCAAACGAGCCAAAGUAUUGCGGCAAUGGAUGGAGAUGAGGAUGAGGAUGAGGACGAGGAUGUGGCAGUGGCAGUGGCAG (((..(((((((......)))..((((((....(((((..(((..((.(((..........)))..))..)))..))))).....(........).....))))))...))))..))).. ( -32.10) >consensus GAUGAUGCUGACGUAAAAGUCGCGCCAUAAAAAUUCAUUGCCAAACGAGCCAAAGUAUUGCGGCAAUGGAUGGAGAUGAGGACGAGGAUGUGGCAGUGGAGGUGGCAGUGGCAGUGGAUG .(((.(((.(((......)))))).)))....(((((((((((.....((((...((((((.(((.......................))).))))))....))))..))))))))))). (-27.83 = -30.17 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:48 2006