Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,706,792 – 7,706,890 |
Length | 98 |
Max. P | 0.996607 |
Location | 7,706,792 – 7,706,890 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 68.22 |
Mean single sequence MFE | -23.17 |
Consensus MFE | -13.24 |
Energy contribution | -14.17 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.33 |
Mean z-score | -2.21 |
Structure conservation index | 0.57 |
SVM decision value | 2.72 |
SVM RNA-class probability | 0.996607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7706792 98 - 22224390 A-------------UAAUUAUCCAUGUAGUUAACAUAUAGUUGUAU---AUUUCGUAGAGCCCACAGUGCUGUGGGCUU---GUGUAAUUUAUUCAUUGGAUUUUCUAGUGCUUCAC (-------------(((((((..((((.....))))))))))))..---........(((((((((....)))))))))---............((((((.....))))))...... ( -24.50) >DroSec_CAF1 5429 81 - 1 A-------------UAAUUAUGUGUG-------CAUAUAGUUGUAU---AUUUCGUAGA-------------UGGGUUUCAUCUAUAAUUUAUUCAUUGGAUUUUCUAGUGCUUCAC (-------------(((((((((...-------.))))))))))..---.....(((((-------------((.....)))))))........((((((.....))))))...... ( -16.60) >DroSim_CAF1 14727 99 - 1 A-------------UAAUUAUGUGUGCAUUU-GCAUAUAGUUGUAU---AUUUCGUAGAGCCCACAGUGC-GUGGGUUUCAUCUAUAAUUUAUUCAUUGGAUUUCCUAGUGCUUCAC (-------------(((((((((((......-))))))))))))..---.....(((((((((((.....-))))))....)))))........((((((.....))))))...... ( -26.20) >DroEre_CAF1 4483 109 - 1 CAAUUCUCUGCACAUAGGCAUAUGUA-------UAUGUACAUUUUUUGUAUUUUUUAGAGCCCACGGUGC-GUGGGUUCCAGCUAUAAUUUAUUCAUGGGAUUUUCUAGUGCCCCAC .........((((...(((.......-------...(((((.....)))))......(((((((((...)-))))))))..)))............((((....))))))))..... ( -25.40) >consensus A_____________UAAUUAUGUGUG_______CAUAUAGUUGUAU___AUUUCGUAGAGCCCACAGUGC_GUGGGUUUCAUCUAUAAUUUAUUCAUUGGAUUUUCUAGUGCUUCAC ....................(((((((.....)))))))..................((((((((......))))))))...............((((((.....))))))...... (-13.24 = -14.17 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:44 2006