Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,705,285 – 7,705,404 |
Length | 119 |
Max. P | 0.603032 |
Location | 7,705,285 – 7,705,404 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -22.56 |
Energy contribution | -23.32 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.10 |
Mean z-score | -1.44 |
Structure conservation index | 0.78 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7705285 119 + 22224390 CACAGUGCACUUUUAGAUAUUUUUGCAGAAGUGCAGCAAC-AAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGUCGCUUUCUUAGCCAUUCUAGUGUUCUUUUUUUUUGUAU .(((((((((((((.((.....))..)))))))))(.(((-(...((((.((((.((((.(((((((((.....))).))))))))))))..))))))....))))).......)))).. ( -31.20) >DroSec_CAF1 3968 114 + 1 CACAGUGUACUUUUAGAUAU--UUGCAGAAGUGCAGCAAA-CAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGUCGCUUUCUUAGCCGUUCUUGUGUUUU---UUUUCUUAU ((((((((((((((......--....))))))))).....-.......((((.((((((.(((((((((.....))).))))))))))....)).)))))))))....---......... ( -29.00) >DroSim_CAF1 13254 115 + 1 CACAGUGUACUUUUAGAUAU--UUGCAGAAGUGCAGCAAC-AAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGUCGCUUUCUUAGCCGUUCUUGUGUUUUU--UUUUCUUAU ((((((((((((((......--....))))))))).....-.......((((.((((((.(((((((((.....))).))))))))))....)).))))))))).....--......... ( -29.00) >DroEre_CAF1 2728 104 + 1 UACAGUGUACUUUUAGAUAU--UCGCAGAAGUGCAGCAAC-AACUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGAC------------GUUCUUGUGUUUUUU-UCUUUUUAU .....(((((((((.(....--.)..)))))))))((((.-(((.(.(((((.(((((.(((......))))))))))))).)------------))).)))).......-......... ( -24.00) >DroYak_CAF1 4573 94 + 1 CACAGUGCACUUUUGGAUAG--UCGCAGAAGUGCAGAAGUGCAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGU-------------------UCUUGUGUGUGUU-UC----CAU .....(((((((((((....--.).))))))))))((((..((.....((((.(((((.(((......))))))))))-------------------)).....))..))-))----... ( -31.80) >consensus CACAGUGUACUUUUAGAUAU__UUGCAGAAGUGCAGCAAC_AAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGUCGCUUUCUUAGCCGUUCUUGUGUUUUUU_UUUUCUUAU ((((((((((((((.((.....))..)))))))))..........(((((((.(((((.(((......)))))))))))))))................)))))................ (-22.56 = -23.32 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:43 2006