Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,701,893 – 7,701,987 |
Length | 94 |
Max. P | 0.513033 |
Location | 7,701,893 – 7,701,987 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.87 |
Mean single sequence MFE | -32.13 |
Consensus MFE | -31.80 |
Energy contribution | -31.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.99 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7701893 94 + 22224390 UUCCCUAGCGCAUCGGACGUGGCCACGUUUAGAUAGCCAUGUCGAGGUGUUUGCAUAAUGAAUGAGCCCCAACCAGCGGCAACAACAGCCGCUG .......(((((((.((((((((............))))))))..)))))..))...................(((((((.......))))))) ( -31.80) >DroSim_CAF1 8057 94 + 1 UUCCCUAGCGCAUCGGACGUGGCCACGUUUAGAUAGCCAUGUCGAGGUGUUUGCAUAAUGAAUGAGCCCCAACCAGCGGCAACAACAGCCGCUG .......(((((((.((((((((............))))))))..)))))..))...................(((((((.......))))))) ( -31.80) >DroYak_CAF1 603 94 + 1 UUGCCCAGCGCAUCGGACGUGGCCACGUUUAGAUAGCCAUGUCGAGGUGUUUGCAUAAUGAAUGAGCCCCGACCAGCGGCAACAACAGCCGCUG .(((..(((((.(((.(((((((............)))))))))).))))).)))..................(((((((.......))))))) ( -32.80) >consensus UUCCCUAGCGCAUCGGACGUGGCCACGUUUAGAUAGCCAUGUCGAGGUGUUUGCAUAAUGAAUGAGCCCCAACCAGCGGCAACAACAGCCGCUG .......(((((((.((((((((............))))))))..)))))..))...................(((((((.......))))))) (-31.80 = -31.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:38 2006