Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,684,296 – 7,684,397 |
Length | 101 |
Max. P | 0.524849 |
Location | 7,684,296 – 7,684,397 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -17.11 |
Energy contribution | -17.42 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.10 |
Mean z-score | -1.44 |
Structure conservation index | 0.71 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7684296 101 + 22224390 UUACUGGUC--GCUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU-UGGUCAGAUCGCGGUGGGAAUGCGGUCA .........--..((((..(...............(((....)))...........((((((......)))))))-..))))(((((((.......))))))). ( -24.00) >DroVir_CAF1 4281 87 + 1 UU-----UUUUAAUUGUUG----------AAAAUCGCAUAAAUGCAAUUAUAAAAUUUCUCAUCAAU-UGGGCAA-CGGUCGCAACGCGGUUCAGUUGCGGUCA ..-----........((((----------......(((....))).............((((.....-)))))))-)(..((((((........))))))..). ( -21.20) >DroPse_CAF1 24627 98 + 1 UU-----UUAUAAUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU-UGGUCAGAUCGCGGUUUCAGUGCGGUCA ..-----..........(((..((((..(((((((((......((((((....))))))......((((((.(..-.).)))))).)))))))))))))..))) ( -24.60) >DroYak_CAF1 2531 102 + 1 UCACUGGUC--GCUGAUUGCAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAUUUGGUCAGAUCGCGGUGGAAAUGCGGUCA ....((..(--..((((((((..((...((....))..))..))))))))......((((((......))))))...)..))(((((((.......))))))). ( -26.40) >DroAna_CAF1 49254 101 + 1 UUAUCGAGC--GCUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU-UGGUCGGAUCGCGGUGGAAAUGCGGUCA ...((.(.(--((.((((.((....((((......(((....)))............(((((......)))))))-)).)).))))))).).)).......... ( -24.50) >DroPer_CAF1 25037 96 + 1 UU-----UA--AAUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU-UGGUCAGAUCGCGGUUUCAGUGCGGUCA ..-----..--......(((..((((..(((((((((......((((((....))))))......((((((.(..-.).)))))).)))))))))))))..))) ( -24.60) >consensus UU_____UC__AAUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU_UGGUCAGAUCGCGGUGGAAAUGCGGUCA .............(((((.................(((....)))...........((((((......))))))...)))))(((((((.......))))))). (-17.11 = -17.42 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:32 2006