Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,677,870 – 7,677,986 |
Length | 116 |
Max. P | 0.657370 |
Location | 7,677,870 – 7,677,986 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -16.25 |
Energy contribution | -18.13 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.68 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657370 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7677870 116 - 22224390 UAUAUAUAUGUAGAUGUACAAUACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUAUCUAUUUGGCCUCACUGGCAUUCGGAGCAUUACGCCUUUGUGCCAGUUCCAGCUGCUUUAA ((.(((((.(((((((.................))))))).))))).)).............(((...((((((((..((.((.....))))..))))))))....)))....... ( -25.03) >DroSec_CAF1 91965 109 - 1 UAU--AUAUGUAGAUGU-----ACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUAUCUAUUUGGCCUCACUGGCAUUCGGAGCAUUAGGCCUUUGUGCCAGUUCCAGCUGCUUUAA .((--(((.(((((((.-----...........))))))).)))))................(((...((((((((..((.((.....))))..))))))))....)))....... ( -25.20) >DroSim_CAF1 70727 109 - 1 UAU--AUAUGUAGAUGU-----ACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUAUCUAUUUGGCCUCACUGGCAUUCGGAGCAUUAGGCCUUUGUGCCAGUUCCAGCUGCUUUAA .((--(((.(((((((.-----...........))))))).)))))................(((...((((((((..((.((.....))))..))))))))....)))....... ( -25.20) >DroEre_CAF1 91134 100 - 1 UCC--AUAUG------U-----ACCUCCAUCUCCAUC---CUAUAUUUAUAAGUAUCUGUUUGCCCUCUCUGGCAUGCGGAGCAUUAGGCCUUUGUGCCAGUUCCAGCUGCUUUAA ...--.....------.-----...............---..........(((((.((((.((((......)))).))(((((....(((......))).))))))).)))))... ( -19.50) >consensus UAU__AUAUGUAGAUGU_____ACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUAUCUAUUUGGCCUCACUGGCAUUCGGAGCAUUAGGCCUUUGUGCCAGUUCCAGCUGCUUUAA .....(((.(((((((.................))))))).)))................((((....((((((((..((.((.....))))..)))))))).))))......... (-16.25 = -18.13 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:28 2006