Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,672,395 – 7,672,508 |
Length | 113 |
Max. P | 0.999974 |
Location | 7,672,395 – 7,672,508 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.53 |
Mean single sequence MFE | -35.85 |
Consensus MFE | -22.01 |
Energy contribution | -23.07 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.04 |
Mean z-score | -3.32 |
Structure conservation index | 0.61 |
SVM decision value | 5.10 |
SVM RNA-class probability | 0.999974 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7672395 113 + 22224390 GAGAGUGG-CGCAUGGUGCAGUGGC------AGUAGCAGUGAAAGGACGAAAGUCCUGGCACAAAGGGCAGGCGGUAAAAACAUUGCCAAGGUCUGGACAAAUGGACAAAGGGGCGUUCA (((.((.(-(((.((.(((....))------).)))).(((..(((((....)))))..))).....)).((((((......))))))...(((((......)))))......)).))). ( -36.80) >DroSec_CAF1 86488 113 + 1 GAGAGUGGCCGCAUGGGGCAGUGGC------AGUAGCAGUGAAAGGACGAAAGUCCUGCCACAAAG-GCAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .......(((((........)))))------....((.(((..(((((....)))))..)))....-))................................................... ( -24.40) >DroSim_CAF1 65271 113 + 1 GAGAGUGG-CGCAUGGGGCAGUGGC------AGUAGCAGUGAAAGGACGAAAGUCCUGCCACAAAGGGCAGGCGGCAAAAACACUGCCAAGGUCUGGACAAAUGGACAAAGGGGCGUUCA ..(((((.-(.(....(((((((..------.((.((......(((((....)))))(((......)))..)).)).....)))))))...(((((......)))))...).).))))). ( -40.80) >DroYak_CAF1 87288 119 + 1 GAGAGUGC-AGCAUGGGGCAGUGGCAGUGGCAGUGGCAGUGAAAGGACGAAAGUCCUGCCACAAAGGGCAGGCGGGAAAAACACUGCCAAGGUCUGGACAAAUGGACAAAUGGACACAUG ....((.(-(...(.((((..((((((((...((((((......((((....)))))))))).....(....)........))))))))..)))).).....)).))..(((....))). ( -41.40) >consensus GAGAGUGG_CGCAUGGGGCAGUGGC______AGUAGCAGUGAAAGGACGAAAGUCCUGCCACAAAGGGCAGGCGG_AAAAACACUGCCAAGGUCUGGACAAAUGGACAAAGGGGCGUUCA ..........((........((.((.......)).)).(((..(((((....)))))..))).....)).(((((........)))))...(((((......)))))............. (-22.01 = -23.07 + 1.06)
Location | 7,672,395 – 7,672,508 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.53 |
Mean single sequence MFE | -24.52 |
Consensus MFE | -13.68 |
Energy contribution | -15.93 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.56 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7672395 113 - 22224390 UGAACGCCCCUUUGUCCAUUUGUCCAGACCUUGGCAAUGUUUUUACCGCCUGCCCUUUGUGCCAGGACUUUCGUCCUUUCACUGCUACU------GCCACUGCACCAUGCG-CCACUCUC .....(((..((((..(....)..))))....)))...........(((.(((.....(((..(((((....)))))..))).((....------))....)))....)))-........ ( -20.40) >DroSec_CAF1 86488 113 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCUGC-CUUUGUGGCAGGACUUUCGUCCUUUCACUGCUACU------GCCACUGCCCCAUGCGGCCACUCUC ...............................................(((.((-...((.((((((((....)))).......((....------))...)))).)).)))))....... ( -18.70) >DroSim_CAF1 65271 113 - 1 UGAACGCCCCUUUGUCCAUUUGUCCAGACCUUGGCAGUGUUUUUGCCGCCUGCCCUUUGUGGCAGGACUUUCGUCCUUUCACUGCUACU------GCCACUGCCCCAUGCG-CCACUCUC ....(((...((((..(....)..))))....(((((((....((((((.........))))))((((....)))).......((....------)))))))))....)))-........ ( -29.40) >DroYak_CAF1 87288 119 - 1 CAUGUGUCCAUUUGUCCAUUUGUCCAGACCUUGGCAGUGUUUUUCCCGCCUGCCCUUUGUGGCAGGACUUUCGUCCUUUCACUGCCACUGCCACUGCCACUGCCCCAUGCU-GCACUCUC ...(((..(....)..)))..((.(((.....(((((((...................((((((((((....))))......)))))).((....))))))))).....))-).)).... ( -29.60) >consensus UGAACGCCCCUUUGUCCAUUUGUCCAGACCUUGGCAGUGUUUUU_CCGCCUGCCCUUUGUGGCAGGACUUUCGUCCUUUCACUGCUACU______GCCACUGCCCCAUGCG_CCACUCUC ................................(((((((............((.....(((..(((((....)))))..))).))............)))))))................ (-13.68 = -15.93 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:24 2006