Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,670,795 – 7,670,896 |
Length | 101 |
Max. P | 0.500000 |
Location | 7,670,795 – 7,670,896 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -32.44 |
Consensus MFE | -23.38 |
Energy contribution | -24.26 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.09 |
Mean z-score | -1.57 |
Structure conservation index | 0.72 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7670795 101 - 22224390 CCAAAACUCUUAUACGGCAAGACCAUACUCUUCGAAAAGGCGAGCUCUUCGGCCGACUUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC ...............(((((((......))))((((.((.....)).)))))))(((((((((......)))))))))...((((((....)))))).... ( -32.40) >DroSec_CAF1 84873 101 - 1 CCAAAACUCUUAUACGGCAAACCAAAACUCUUCUAAAAUGCGAGCUCUUCGGCCGCCUUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC ...............(((.....................(((((..(((((.(((((.....))).))...)))))..)))))((((....)))))))... ( -31.40) >DroSim_CAF1 63667 101 - 1 CCAAAACUCUUAUACGGCAAACCCAAACUCUUCUAAAAUGCGAGCCCUUCGGCCGCCUUCGUGGCAGGACACGAGGUCCUUCCGUCGCUGCCGACGCCUGC ..............(((((....................(((.(((....))))))....((((((((((.....)))))...))))))))))........ ( -28.20) >DroEre_CAF1 84042 95 - 1 CCACAACUCUUAUACGGCAC------ACUCUUCUAAAACGCGAGCUCGUCGGUCGAGCUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC ...............(((..------.............(((((((((.....)))))))))((((((((.((((...)))).))).)))))...)))... ( -37.90) >DroYak_CAF1 85368 95 - 1 CCACCACUCUUAUACGGCAA------ACUCUACGAAAUGCCAAACUCUUCGGCGGACUUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC ...............((((.------...........)))).........(((((((((((((......))))))))))....((((....)))))))... ( -32.30) >consensus CCAAAACUCUUAUACGGCAA__C_A_ACUCUUCUAAAAGGCGAGCUCUUCGGCCGACUUCGUGGCAGGACACGAGGUCCUUGCGUCGCUGCCGACGCCUGC ...............(((.....................(((((..(....)..(((((((((......))))))))))))))((((....)))))))... (-23.38 = -24.26 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:22 2006