Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,670,549 – 7,670,659 |
Length | 110 |
Max. P | 0.903012 |
Location | 7,670,549 – 7,670,659 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 83.23 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -29.99 |
Energy contribution | -29.33 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.11 |
Mean z-score | -1.36 |
Structure conservation index | 0.93 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7670549 110 - 22224390 CCCCAAUUCCCACCCCCCCCCCCCUUUGGCAGUCCUUGCUGCUGGCAAUCAGCGAAACGUUACGUGCGUUGCCUG--CUUUUUGUGUUUUUGUCCUGUUCCACAGGACGAGU- ...........................((((((....)))))).((((..((((.(((((.....)))))...))--))..))))...(((((((((.....))))))))).- ( -30.50) >DroEre_CAF1 83798 108 - 1 UAUCC--CCCCACCCCCUUCCCCCUUUGGCAGUCCUCGCUGCUGGCAAUCAGCGGAACGUUACGUGCGUUGCCUG--UUUUUUGUGUUUUUGUCCUGUUCCACAGGACGGGU- .....--((((((..............((((((....))))))((((((..(((........)))..))))))..--......))).....((((((.....))))))))).- ( -33.90) >DroYak_CAF1 85093 110 - 1 UUUCU--UAGUAC-CCUUCCCCCCUACGGCAGUCCUCGCUGCUGGCAAUCAGCGAAACGUUACGUGCGUUGCCUGUGUUUUUUGUGUUUUUGUCCUGUGCCGCGGGACGGGCA .....--.....(-((..........(((((((....)))))))((((..((((.(((((.....))))).....))))..))))......((((((.....))))))))).. ( -32.50) >consensus UAUCA__UCCCACCCCCUCCCCCCUUUGGCAGUCCUCGCUGCUGGCAAUCAGCGAAACGUUACGUGCGUUGCCUG__UUUUUUGUGUUUUUGUCCUGUUCCACAGGACGGGU_ ..........(((..............((((((....))))))((((((..(((........)))..))))))..........)))..(((((((((.....))))))))).. (-29.99 = -29.33 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:21 2006