Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,642,625 – 7,642,733 |
Length | 108 |
Max. P | 0.860870 |
Location | 7,642,625 – 7,642,733 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.99 |
Mean single sequence MFE | -37.34 |
Consensus MFE | -16.72 |
Energy contribution | -18.92 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.39 |
Mean z-score | -2.66 |
Structure conservation index | 0.45 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7642625 108 + 22224390 GCUGUUGGUGAAAAGCGGCAGCAC---UUGGCACUUGGCACAUGGAAGAUGCG-GAAUUUUCCCUGCUGUUUACAGUGCA--------GCAAAAGAUGGAAAAAUGUGUGAGUGCAAAUA (((((((.(....).)))))))..---...(((((((.((((((((((((...-..))))))).((((((.......)))--------)))............))))))))))))..... ( -40.30) >DroPse_CAF1 94708 108 + 1 GCUGCUGGUGAAGCGCUCCAGCAC---UUGGCACUCGGCACAUGGCAGAUGCG-GAAUUUGCCCUGCUGUUUACGGAGCA--------GCAAAAGAUGGAAAAAUGUGCGAGCGCAAAUA ..((((((.(.....).)))))).---...((.((((.((((((((((((...-..))))))).((((((((...)))))--------)))............))))))))).))..... ( -41.20) >DroEre_CAF1 64581 101 + 1 GCUGUUGGUGAAAAGCGGCGGCAC---UUGCCACUUGCCACU-------UUCG-GAGUUUUCCCUGCUGUUUACAGUGCA--------GCAAGAGAUGGAAAGAUGUGUGAGUGCAAAUA ((((((.......)))))).((((---(..((((((.(((.(-------((((-(......)).((((((.......)))--------))).))))))).))).)).)..)))))..... ( -37.40) >DroWil_CAF1 79370 119 + 1 GCUGCAAGUGAAGCGCUG-AACACUCUUUGGCACUUGGCACAUGGCAGAUGCGGGAAUUUUUCGUGCUAUUUACAGAGCAAGACUUCUGCAAAAAAUGGAAAAAUGUGUGAAGGUAAAUA (((........)))((..-((.....))..)).(((.((((((.(((((.(((..(...)..)))(((........)))......))))).............)))))).)))....... ( -28.74) >DroYak_CAF1 63575 98 + 1 GCUGUUGGUGAAAAGCGGCAGCAC---UUGGCACUUGGCACAUGGAAGAUGCG-GAAUUUUCCCUGCUGUUUGCAGUGCA--------G-------UGCAAAAGUAU---AGUGCAAAUA (((((((.(....).)))))))((---((.(((((..((((..(((((((...-..))))))).(((.....))))))))--------)-------)))..))))..---.......... ( -35.20) >DroPer_CAF1 78683 108 + 1 GCUGCUGGUGAAGCGCUCCAGCAC---UUGGCACUCGGCACAUGGCAGAUGCG-GAAUUUGCCCUGCUGUUUACGGAGCA--------GCAAAAGAUGGAAAAAUGUGCGAGCGCAAAUA ..((((((.(.....).)))))).---...((.((((.((((((((((((...-..))))))).((((((((...)))))--------)))............))))))))).))..... ( -41.20) >consensus GCUGCUGGUGAAAAGCGGCAGCAC___UUGGCACUUGGCACAUGGCAGAUGCG_GAAUUUUCCCUGCUGUUUACAGAGCA________GCAAAAGAUGGAAAAAUGUGUGAGUGCAAAUA (((((((........)))))))........((.((((.((((((((((((......)))))))...(((....)))...........................))))))))).))..... (-16.72 = -18.92 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:17 2006