Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,635,841 – 7,635,944 |
Length | 103 |
Max. P | 0.994414 |
Location | 7,635,841 – 7,635,944 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 69.25 |
Mean single sequence MFE | -22.30 |
Consensus MFE | -14.18 |
Energy contribution | -12.42 |
Covariance contribution | -1.76 |
Combinations/Pair | 1.35 |
Mean z-score | -1.92 |
Structure conservation index | 0.64 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.982042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7635841 103 + 22224390 GCACAUUCCCAUACGCGUACGUGUGGGUA--UAUGCAUAUUUUCAUGAUUUCCCAUGCUUUUAUGCGGCAUACGAGGAAUGUUUUUGCAGCGUUUUUUUUU--------UUUU (((((((((((((((....)))))).(((--(.((((((....((((......))))....))))))..))))..)))))))....)).............--------.... ( -28.20) >DroPse_CAF1 85511 86 + 1 AUA-GUUUAUACAUGCAUAUGU----ACA--UAUGUAUAUUUAUGUGAUUUUUCAUGUUUUUAUAUGGCGAACGAAAAAUGUUUAUGCAGCGU-------------------- ...-.........((((((...----.((--((((......))))))(((((((.((((.......))))...)))))))...))))))....-------------------- ( -13.80) >DroEre_CAF1 57836 104 + 1 GCACAUUCCCAUACGCGUACAUGUGGGUA--UAUGCAUAUUUUCAUGAUUUUCCAUGCUUUUAUGCGGCAUGCGAGAAAUGUUUUUGCAGCGUUUUUU-------GCUCCUUU ((.....((((((........))))))..--..((((((....((((......))))....))))))))..((((((((((((.....))))))))))-------))...... ( -28.90) >DroYak_CAF1 55110 112 + 1 GCACAUUCACAUACGCGUACGUGUGUGUAUAUAUGCAUAUUUUCAUGAUUUUCCAUGCUUUUAUGCGGCAUACGAGAAAUGUUUUUGCAGCGUUCUUUUUUUGUUGGUC-UUU ((......((((((((....)))))))).....((((((....((((......))))....))))))))....(((((.(((....)))...)))))............-... ( -25.40) >DroPer_CAF1 69715 82 + 1 AUA-GUUUAUACAUGCAUAUGU----------AUGUAUAUUUAUAUGAUUUUUCAUGUUUUUAUAUGGCGAACGAAAAAUGUUUCUGCAGCGU-------------------- ...-...(((((((((....))----------)))))))...((((((....)))))).........((....((((....))))....))..-------------------- ( -15.20) >consensus GCACAUUCACAUACGCGUACGUGUG_GUA__UAUGCAUAUUUUCAUGAUUUUCCAUGCUUUUAUGCGGCAUACGAGAAAUGUUUUUGCAGCGUU_UUU____________UUU ............((((.................((((((....((((......))))....))))))(((.(((.....)))...))).)))).................... (-14.18 = -12.42 + -1.76)
Location | 7,635,841 – 7,635,944 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 69.25 |
Mean single sequence MFE | -18.92 |
Consensus MFE | -6.69 |
Energy contribution | -7.37 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.12 |
Mean z-score | -2.52 |
Structure conservation index | 0.35 |
SVM decision value | 2.48 |
SVM RNA-class probability | 0.994414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7635841 103 - 22224390 AAAA--------AAAAAAAAACGCUGCAAAAACAUUCCUCGUAUGCCGCAUAAAAGCAUGGGAAAUCAUGAAAAUAUGCAUA--UACCCACACGUACGCGUAUGGGAAUGUGC ....--------...................(((((((.(((((((.(((((....(((((....)))))....)))))...--(((......))).)))))))))))))).. ( -28.20) >DroPse_CAF1 85511 86 - 1 --------------------ACGCUGCAUAAACAUUUUUCGUUCGCCAUAUAAAAACAUGAAAAAUCACAUAAAUAUACAUA--UGU----ACAUAUGCAUGUAUAAAC-UAU --------------------(((.((((((...(((((((((...............))))))))).(((((........))--)))----...)))))))))......-... ( -12.26) >DroEre_CAF1 57836 104 - 1 AAAGGAGC-------AAAAAACGCUGCAAAAACAUUUCUCGCAUGCCGCAUAAAAGCAUGGAAAAUCAUGAAAAUAUGCAUA--UACCCACAUGUACGCGUAUGGGAAUGUGC ...(.(((-------.......))).)............(((((...(((((....((((......))))....)))))...--..((((.(((....))).)))).))))). ( -24.60) >DroYak_CAF1 55110 112 - 1 AAA-GACCAACAAAAAAAGAACGCUGCAAAAACAUUUCUCGUAUGCCGCAUAAAAGCAUGGAAAAUCAUGAAAAUAUGCAUAUAUACACACACGUACGCGUAUGUGAAUGUGC ...-...........................((((((..(((((((.(((((....((((......))))....))))).....(((......))).))))))).)))))).. ( -21.80) >DroPer_CAF1 69715 82 - 1 --------------------ACGCUGCAGAAACAUUUUUCGUUCGCCAUAUAAAAACAUGAAAAAUCAUAUAAAUAUACAU----------ACAUAUGCAUGUAUAAAC-UAU --------------------.............(((((((((...............)))))))))........(((((((----------.(....).)))))))...-... ( -7.76) >consensus AAA____________AAA_AACGCUGCAAAAACAUUUCUCGUAUGCCGCAUAAAAGCAUGGAAAAUCAUGAAAAUAUGCAUA__UAC_CACACGUACGCGUAUGUGAAUGUGC ....................((((.((.................)).(((((....(((((....)))))....)))))..................))))............ ( -6.69 = -7.37 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:15 2006