Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,633,482 – 7,633,581 |
Length | 99 |
Max. P | 0.930190 |
Location | 7,633,482 – 7,633,581 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 77.85 |
Mean single sequence MFE | -13.92 |
Consensus MFE | -9.54 |
Energy contribution | -8.68 |
Covariance contribution | -0.86 |
Combinations/Pair | 1.20 |
Mean z-score | -1.86 |
Structure conservation index | 0.69 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7633482 99 - 22224390 -----UUGCUCAACUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUUAUAUCA-------ACAUCAACAGCAA--ACAUGAGAUACAAC---AA -----(((((....((((..(((.....)))...)))).......(((((.......))))).............-------........)))))--..............---.. ( -12.20) >DroVir_CAF1 99945 99 - 1 ---UGUUGUAAAACUUCUAAACAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCAUAUCGGCUCAAAAUAUCAACAACAACAACAAC-------------- ---((((((........(((.....))).((.(((((((((....(((((.......))))).))))))...)))))...........))))))........-------------- ( -11.70) >DroPse_CAF1 83638 94 - 1 UUCUCUUGCCCAAGUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCACAUCA-------ACAACAGCA-CA--------------AACAGCAA ......(((...........(((.....)))(((.((((((....(((((.......))))).)))))).)))..-------.........-..--------------....))). ( -13.10) >DroEre_CAF1 56143 102 - 1 -----UUGCUCAACUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUUAUAUCA-------ACAUGGACAACAA--ACAUGAGCUACAACAACAA -----..(((((........(((((..(((((((((...))))...)))))....)))))...............-------...((.....)).--...)))))........... ( -16.30) >DroYak_CAF1 53335 102 - 1 -----UUGCUCAACUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCAUAUCA-------ACAUCAGCAACAA--ACAUGAGCUACAACAACCA -----..(((((........(((.....)))....((((((....(((((.......))))).))))))......-------.............--...)))))........... ( -17.10) >DroPer_CAF1 67807 94 - 1 UUCUCUUGCCCAAGUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCACAUCA-------ACAACAGCA-CA--------------AACAGCAA ......(((...........(((.....)))(((.((((((....(((((.......))))).)))))).)))..-------.........-..--------------....))). ( -13.10) >consensus _____UUGCUCAACUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCAUAUCA_______ACAUCAACAACAA__ACAUG______AACA_CAA .....((((...........))))....((.(((.((((((....(((((.......))))).)))))).)))))......................................... ( -9.54 = -8.68 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:13 2006