Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,633,119 – 7,633,210 |
Length | 91 |
Max. P | 0.516832 |
Location | 7,633,119 – 7,633,210 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 77.36 |
Mean single sequence MFE | -19.18 |
Consensus MFE | -13.83 |
Energy contribution | -14.22 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.15 |
Mean z-score | -0.91 |
Structure conservation index | 0.72 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7633119 91 - 22224390 GUUGGAGAAGGCCAAAAAA-----------GCAA-GAACGGGAAAAAU--GGAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA .((((......))))..((-----------((..-((((..((((((.--(....))))))).........(((..((((.....)))))))..))))..)))). ( -21.70) >DroVir_CAF1 98956 96 - 1 GGCCAAAAGAUC---UCAGCCGCA------AUGUGAAGCGAAAAAAAAAAAGAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA (((.........---...)))...------..(((((((((((((...........)))))).........(((..((((.....)))))))..)))).)))... ( -16.10) >DroPse_CAF1 83279 85 - 1 GCUCGAGGAAUCAA-------------------A-GAGGGGAAAAAAUAAGAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA ..............-------------------.-(((.(((((......((((....)))).........(((..((((.....)))))))...))))).))). ( -16.30) >DroEre_CAF1 55775 102 - 1 GUUGAAGAAGGCCAAAAAACGAGAACGGGAACGG-GAACGGGAAAAAU--GAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA ........((((..............(....)((-((((.((((((.(--....).)))))).........(((..((((.....)))))))..)))))))))). ( -21.20) >DroYak_CAF1 52971 92 - 1 GUUGAAGAAGGCCAACAAAC----------ACAA-GAGCGGGAAAAAU--GAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA ((((........))))....----------....-(((((((((...(--((((....)))))........(((..((((.....)))))))...))))))))). ( -23.50) >DroPer_CAF1 67431 85 - 1 GCUCGAGGAAUCAA-------------------A-GAGGGGAAAAAAUAAGAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA ..............-------------------.-(((.(((((......((((....)))).........(((..((((.....)))))))...))))).))). ( -16.30) >consensus GUUCAAGAAAGCCA__AAA___________AC_A_GAGCGGAAAAAAU__GAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA ...................................(((((((((......((((....)))).........(((..((((.....)))))))...))))))))). (-13.83 = -14.22 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:12 2006