Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,630,477 – 7,630,576 |
Length | 99 |
Max. P | 0.839385 |
Location | 7,630,477 – 7,630,576 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.71 |
Mean single sequence MFE | -22.29 |
Consensus MFE | -12.90 |
Energy contribution | -14.49 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.09 |
Mean z-score | -2.02 |
Structure conservation index | 0.58 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7630477 99 - 22224390 CCA-GUU--GAUACGAGAAAAAGGCUAAGGGAGAAGUGCCAAAAUAAA----------UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC----GAAAAAAAUGUAUUGCA ...-(((--((..(........)......((....((((((((.....----------))))))))...))....)))))..((((((((.....----........)))))))). ( -22.02) >DroSec_CAF1 47127 99 - 1 CCA-GUU--GAUACGAGAAAAAGGCUAAGGGAGGAGUGCCAAAAUAAA----------UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC----GAAAAAAAUGUAUUGCA ...-(((--((..(........).........((.((((((((.....----------))))))))...))....)))))..((((((((.....----........)))))))). ( -22.22) >DroSim_CAF1 49158 99 - 1 CCA-GUU--GAUACGAGAAAAAGGCUAAGGGAGGAGUGCCAAAAUAAA----------UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC----GAAAAAAAUGUAUUGCA ...-(((--((..(........).........((.((((((((.....----------))))))))...))....)))))..((((((((.....----........)))))))). ( -22.22) >DroEre_CAF1 53143 97 - 1 CAA-GUU--GAGACGAGAAAACGGCUAGGGA-AGGGUGCCAAAAUAAA----------UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC-----GAAAAAAUCUAUUGCA ...-(((--(((.((......))....((..-.(.((((((((.....----------)))))))).).))...))))))..((((((.......-----.........)))))). ( -25.19) >DroYak_CAF1 50219 103 - 1 CAA-GUU--GAUACGAGAAAAAGGCCGAGGACGGGGUGCCAAAAUAUA----------UUUGGCACGCGCCACACUCAAUAAGCCAUAUAAAUCGCCAAAAAAAAAAUGUAUUCCA ...-...--....(((......(((.(((...(((((((((((.....----------)))))))).).))...))).....))).......)))..................... ( -21.02) >DroPer_CAF1 64506 101 - 1 GCAAGCAAGGAUUGGAAAAGGAGGC-----------UGACAGAAUGGAUGGCGUGGCGUUUGGCACGCGCCGCACCCAAUAAGCAAUAUAAAUUC----CUAAAAAGUAUAUUUGA ((.(((.....((....))....))-----------).......(((.(((((((((.....)).)))))))...)))....))...........----................. ( -21.10) >consensus CCA_GUU__GAUACGAGAAAAAGGCUAAGGGAGGAGUGCCAAAAUAAA__________UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC____GAAAAAAAUGUAUUGCA ..............(((.....(((........(.((((((((...............)))))))).))))...))).....((((((((.................)))))))). (-12.90 = -14.49 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:09 2006