Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,626,592 – 7,626,689 |
Length | 97 |
Max. P | 0.911558 |
Location | 7,626,592 – 7,626,689 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.53 |
Mean single sequence MFE | -20.63 |
Consensus MFE | -14.16 |
Energy contribution | -13.08 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.32 |
Mean z-score | -1.40 |
Structure conservation index | 0.69 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7626592 97 + 22224390 -----UUU--UUGGA----UUU-----UUCUUUUUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCAAAACUUGCUUUGUUUGCUGAAUGGGAAUGGAAA------- -----...--(((((----(((-----....((((((.......))))))..))))))))(((((.(((...(..(((((.....)))))..)..))))))))..........------- ( -22.70) >DroVir_CAF1 89618 94 + 1 --------GCUGGUAGAAAGCG-----AUUUUUAUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGGGGUGAAAUUUGCUUUGUUUGCAAAAUAAUAU------------- --------(((.......))).-----..........((((((((((((((((((........)))))))))((..((..(...)..))..))..)))))))))...------------- ( -18.00) >DroPse_CAF1 76348 116 + 1 CCCACUCUAUGGGUA----UAUUCUAGUUUUUUGUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCAAAACUUGCUUUGUUUGCGGAACAAGACGAGAGAUCCAGCA ((((.....))))..----.......(((((((((.(((.(((((((((((((((........)))))))))(..(((((.....)))))..)..)))))).))))))))))))...... ( -24.70) >DroGri_CAF1 131334 93 + 1 --------GUUGGCA-AAAGCG-----AUUUUUAUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGGGGUGAAAUUCGCUUUGUUUGCAGAAUAAGGC------------- --------....((.-...)).-----.........(((((((((((((((((((........)))))))))((..((((.....))))..))..))))))))))..------------- ( -19.90) >DroEre_CAF1 49183 99 + 1 -----UUUGUUGGUA----CUU-----UUCUUUUUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCGAAACUUGCUUUGUUUGCUGAUUGGGAAAGGCAA------- -----...(((((..----..(-----((..((((((.......))))))..))).)))))...(((((...(..((((((...))))))..)..))))).............------- ( -20.20) >DroYak_CAF1 46475 96 + 1 -----UUUUUUUGGA----AUU-----UUCUUUUUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCAAAACUUGCUUUGUUUGCCGAAUGGAAGAGG---------- -----.....(((((----.((-----(...((((((.......))))))..))))))))........((((((..((((((.(.......)))))))..))))))....---------- ( -18.30) >consensus _____UUUGUUGGUA____GUU_____UUCUUUUUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCAAAACUUGCUUUGUUUGCAGAAUAAGAA_GG__________ ....................................(((((((.(((((((((((........)))))))))(..((((((...))))))..)..)).)))))))............... (-14.16 = -13.08 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:09 2006