Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,623,664 – 7,623,779 |
Length | 115 |
Max. P | 0.708822 |
Location | 7,623,664 – 7,623,779 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 74.26 |
Mean single sequence MFE | -36.16 |
Consensus MFE | -13.12 |
Energy contribution | -14.35 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.33 |
Mean z-score | -2.16 |
Structure conservation index | 0.36 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7623664 115 + 22224390 AAUAGUAGGUGUGAAUCGCAAUGGUCUGCUGGACUUUUAUCAUGAACAGGUUCAUGGAACUCCUUUAACUAAGAAGGAAGUCGAGUGUCCAGAGGAUGGAAUUAUGAACAUCAAG .......(((((...(((.(((.((((.((((((.(((..((((((....))))))((..((((((......))))))..))))).)))))).))))...))).))))))))... ( -33.30) >DroSec_CAF1 40618 115 + 1 AACAGUUGGUGUGAAUCGCCAUGGUCUGCUGGACUCUUAUCGUGAACAGAUUCAUGGAACUCCUUUAACUAGGAAGGAAGUCGAGUGUCCAGAGGAUGGAAUUAAGAACACCAAG .....(((((((......((((..(((.((((((.(((..((((((....))))))((..((((((......))))))..))))).)))))))))))))........))))))). ( -39.54) >DroSim_CAF1 42616 115 + 1 AACAGUUGGUGUGAAUCGCCAUGGUCUGCUGGACUCGUAUCGUGAACAGAUUCAUGGAACUCCUUUAACUAGGAAGGAAGUCGAGUGUCCAGAGGAUGGAAUUAAGAACGCCAAG .....(((((((......((((..(((.((((((.(....((((((....))))))((..((((((......))))))..))..).)))))))))))))........))))))). ( -37.14) >DroEre_CAF1 46403 115 + 1 AAUAGCUGGCGUAAAUCGCCAUGGUCUGCUGGAACUGUAUCAUCAGCGGGUUUAUGGAUCUCCUCUAACUAAGAAGGUAAUCGAGUGUCCAGGGGACGGAAUGAUGAAUUUCAAG ......(((((.....)))))..((((.((((((((.((((.((....((((...((....))...))))..)).))))....))).))))).))))(((((.....)))))... ( -33.60) >DroYak_CAF1 43211 115 + 1 AAUAGUUGGCGUGAAUCGCCAUGGGCUGCUGGACAUGUACCAUCAGCAGGUUCAUGGCGCUCCUCUAACUAGAAAGGGCAUCGAGUGUCCAGCGGAUGGAAUGAUGAAUUUGCAG ..(((((((.(.((..((((((((((((((((..........)))))).)))))))))).))).)))))))....((((((...)))))).((((((..........)))))).. ( -41.80) >DroPer_CAF1 54537 100 + 1 UCCAGGUUUGAUCAAUCGCCAGGGCCUGAUUGAAGCGUAUCAUAAGCAGUUGCAUGGGGAUCC---------GAAUGCAGUUG-GCGUUGAGUGGAUGGA----UAAGCUUGCA- ..((((((((.(((.(((((((.(((.(((((...((.(((.((.((....)).))..))).)---------)....))))))-)).))).)))).))).----))))))))..- ( -31.60) >consensus AACAGUUGGUGUGAAUCGCCAUGGUCUGCUGGACUCGUAUCAUGAACAGGUUCAUGGAACUCCUUUAACUAGGAAGGAAGUCGAGUGUCCAGAGGAUGGAAUUAUGAACUUCAAG ......(((((.....)))))..((((.((((((.....((((.((....)).)))).((((......((....))......)))))))))).)))).................. (-13.12 = -14.35 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:08 2006