Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,616,790 – 7,616,882 |
Length | 92 |
Max. P | 0.500000 |
Location | 7,616,790 – 7,616,882 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 77.11 |
Mean single sequence MFE | -21.87 |
Consensus MFE | -9.52 |
Energy contribution | -10.24 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.31 |
Mean z-score | -2.02 |
Structure conservation index | 0.44 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7616790 92 - 22224390 CCAAUUUAAUUACUUAAGCUCAUUAAGGCUCAUUACCCU-CAAGUUCGACUGCUUGAAGCAGUUUAGCAGUUGAGUUGAAUUA----GCUGCAGCUU ...............(((((......((((.(((...((-((((((.((((((.....)))))).)))..)))))...))).)----)))..))))) ( -22.70) >DroSec_CAF1 33882 96 - 1 CCAAUUUAAUUACUUAAGCUCAUUAAGGCUCAUUACCCU-CAAUUUCGACUGCUUGAAGCAGUUUAGCAGUUGAGUUGAAUUAGCUAGCUGCAGCUU ...............(((((((....((((.(((...((-(((((.(((((((.....))))))..).)))))))...))).))))...)).))))) ( -23.40) >DroSim_CAF1 35882 96 - 1 CCAAUUUAAUUACUUAAGCUCAUUAAGGCUCAUUACCCU-CAAGUUCGACUGCUUGAAGCAGUUAAGCAGUUGAGUUGAAUUAGCUAGCUGCAGCUU ...............(((((......((((..(((...(-(((.(((((((((((((.....)))))))))))))))))..)))..))))..))))) ( -25.70) >DroEre_CAF1 39610 92 - 1 CCAAUUUAAUUACUUAACCUCAUUAAGGCUCAUUACACU-CAAGUUCGACUGCUUGAAGCAAUUCAGCAGCGGAGUUGAACUA----GCUGCAGCUU ............(((((.....)))))(((((......(-(((.((((.(((((.(((....)))))))))))).))))....----..)).))).. ( -23.70) >DroYak_CAF1 36012 76 - 1 CCAAUUUAAUUACUUAAGCUCAUUA-----------------GGUUCGACUGCUUGAAGCAUUUUAGCAGUAGAGUUGAAUUA----ACUGCAGCUU ...............(((((((.(.-----------------.((((((((.((....((......))...))))))))))..----).)).))))) ( -15.40) >DroAna_CAF1 32780 78 - 1 GCAAUUUAAUUACUUAAGCU------GGCUCCUGGCACUCCAAGUUGGAGAGCUCCAAAGUUUCCAGCAGC-----UGAAUUA----GCUGAA---- .................(((------((...(((((.((((.....)))).)))....))...)))))(((-----((...))----)))...---- ( -20.30) >consensus CCAAUUUAAUUACUUAAGCUCAUUAAGGCUCAUUACCCU_CAAGUUCGACUGCUUGAAGCAGUUUAGCAGUUGAGUUGAAUUA____GCUGCAGCUU ...............(((((...........................((((((.....))))))..(((((................)))))))))) ( -9.52 = -10.24 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:06 2006