Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,616,233 – 7,616,332 |
Length | 99 |
Max. P | 0.584405 |
Location | 7,616,233 – 7,616,332 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 77.04 |
Mean single sequence MFE | -20.37 |
Consensus MFE | -9.43 |
Energy contribution | -9.65 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.25 |
Mean z-score | -1.98 |
Structure conservation index | 0.46 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7616233 99 + 22224390 ACCCCUCCCGCUCUUUUCGCCAUCGAAAGGUAGCUGCCCAUUUGGGCUCUGGCCUCAUAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU .........((((((((((....))))))).))).((((....))))...((((....((((...((.((((((......))))))))..)))).)))) ( -24.50) >DroSec_CAF1 33328 94 + 1 ----CCCCUGCUCUUCUCGCCAUCGAAAGGUAGCUGC-CAUUUUGGCUCUGUCCUCAUAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU ----..............((((.....((((((..((-(.....))).))).))).............((((((......))))))........)))). ( -17.70) >DroSim_CAF1 35329 94 + 1 ----CCCCUGCUCUUCUCGCCAUCGAAAGGUAGCUGC-CAUUUUGGCUCUGGCCUCAUAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU ----..............((.(((....))).)).((-((....(((....)))..............((((((......))))))........)))). ( -19.30) >DroEre_CAF1 39089 79 + 1 -------------------CCUCCGCCUGGCUGCUGC-CAUUUGGGCUCUGGCCUCAUAUUACCGAUAGAAAAUAAAUGAAUUUUCAUAAUAAUUGGCU -------------------.....(((.(((((..((-(.....)))..)))))..............((((((......)))))).........))). ( -19.30) >DroYak_CAF1 35394 79 + 1 -------------------ACACCGAAAGGUAGCUGC-CAUUUGGGCUUUGGCCUCAUAUUGCCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU -------------------..(((....)))....((-((.(((....(((((........)))))..((((((......))))))....))).)))). ( -20.40) >DroPer_CAF1 45938 86 + 1 ----CCGUAGCUGCUGAAGCCA--------UGGCCUC-CAUCUGGGUCCUGGACUCGCAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU ----((((((.(((.((..(((--------.(((((.-.....))))).)))..))))))))).....((((((......)))))).........)).. ( -21.00) >consensus ____CCCC_GCUCUU_UCGCCAUCGAAAGGUAGCUGC_CAUUUGGGCUCUGGCCUCAUAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU .....................(((....)))((((.........(((....)))..............((((((......)))))).........)))) ( -9.43 = -9.65 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:05 2006