Locus 2850

Sequence ID X_DroMel_CAF1
Location 7,608,986 – 7,609,089
Length 103
Max. P 0.679978
window4678

overview

Window 8

Location 7,608,986 – 7,609,089
Length 103
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 94.55
Mean single sequence MFE -24.40
Consensus MFE -20.39
Energy contribution -20.45
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.82
Structure conservation index 0.84
SVM decision value 0.30
SVM RNA-class probability 0.679978
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7608986 103 + 22224390
UUCCUCGAGAGUCACUCGAGCCAUGUGGAUUUCCAGAAGGAAAUGCUCUGCAAGCCGGGAUUUUCUUAAAUAUCGUUUUGCAUCUCAUAUUCUUUUCCCUUCU
...((((((.....)))))).....(((....)))((((((.(((...((((((.((..((((....))))..)).))))))...))).))))))........ ( -24.20)
>DroSec_CAF1 26028 99 + 1
UUCCUUGAGAGUCACUCGAGCCAUGUGGCUUUCCAGAAGGA----CUCUGCAAGCCGGGAUUUUCUUAAAUAUCGUUUUGCAGCUCAUAUUCUUUUCCCUUUU
.((((((((((((((.........)))))))))...)))))----..(((((((.((..((((....))))..)).))))))).................... ( -26.50)
>DroSim_CAF1 28026 99 + 1
UUCCUCGAGAGUCACUCGAGCCAUGUGGCUUUCCAGAAGGA----CUCUGCAAGCCGGGAUUUUCUUAAAUAUCGUUUUGCAUCUCAUAUUCUUUUCCCUUUU
.......((((((..(((((((....)))))....))..))----))))(((((.((..((((....))))..)).)))))...................... ( -23.50)
>DroEre_CAF1 31863 99 + 1
UUCCUCGAGAGUCACUCGAGCCAUGUGGCUUUCCAGAAGGA----CUCGGCAAGCUGGGAUUUUCUUAAAUAUCGUUUUGCAUCUCAUAUUCUGUUCCCUUUU
......(((((((((.........)))))))))(((((.((----....(((((.((..((((....))))..)).)))))...))...)))))......... ( -23.40)
>consensus
UUCCUCGAGAGUCACUCGAGCCAUGUGGCUUUCCAGAAGGA____CUCUGCAAGCCGGGAUUUUCUUAAAUAUCGUUUUGCAUCUCAUAUUCUUUUCCCUUUU
.((((.(((((((((.........)))))))))....))))........(((((.((..((((....))))..)).)))))...................... (-20.39 = -20.45 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:04 2006