Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 958,036 – 958,144 |
Length | 108 |
Max. P | 0.983067 |
Location | 958,036 – 958,144 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.57 |
Mean single sequence MFE | -33.17 |
Consensus MFE | -23.20 |
Energy contribution | -24.46 |
Covariance contribution | 1.26 |
Combinations/Pair | 1.17 |
Mean z-score | -2.45 |
Structure conservation index | 0.70 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 958036 108 + 22224390 AGGCCAAGCAUGACUGCCAUUCGAGAUGCCAGAUGCCAAUCUUGUAUCUUGUGGGUUGGGUUGGCUUCCCUAUUUUCGAGGAUUGCGAAUGCAUUUGGCAUUCUUUCC (((((((.(......(((...((((((((.((((....)))).))))))))..)))..).))))))).(((.......))).....((((((.....))))))..... ( -35.90) >DroSec_CAF1 40855 107 + 1 AGGCCAAGCAUGACUGCCAUCCGAGAUACCAGAUGCCAAUCUUGUAUCUUGUGGGUUGGGUUGGCUUCCCUAUUUUCGGGGAUUGCAAAUGCAU-UGGCAUUCUUUCC ..((((((((((((((((...((((((((.((((....)))).))))))))..)))..)))).((.(((((......)))))..))..)))).)-))))......... ( -40.20) >DroEre_CAF1 49395 82 + 1 AGGCCAAGCAUGACUGCCAUUCGAGAU-------GCCAAUCUUGU------------GGAUUGGUUUCCCUAUUUUCGGGGAUUGC------AU-UGCCAUUCUUUUC .(((...(((.((((.(((..((((((-------....)))))))------------))...))))(((((......))))).)))------..-.)))......... ( -23.40) >consensus AGGCCAAGCAUGACUGCCAUUCGAGAU_CCAGAUGCCAAUCUUGUAUCUUGUGGGUUGGGUUGGCUUCCCUAUUUUCGGGGAUUGC_AAUGCAU_UGGCAUUCUUUCC ..((((.((((...(((..(((((((........((((((((...(((.....))).))))))))........)))))))....))).))))...))))......... (-23.20 = -24.46 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:49 2006