Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,597,096 – 7,597,192 |
Length | 96 |
Max. P | 0.906019 |
Location | 7,597,096 – 7,597,192 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.85 |
Mean single sequence MFE | -37.35 |
Consensus MFE | -27.55 |
Energy contribution | -28.92 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.06 |
Mean z-score | -2.83 |
Structure conservation index | 0.74 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.906019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7597096 96 + 22224390 CGGCCG-----GGCAAAUGCUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCCGAUGAUGAUGACGGCGAUGGGGCG ..((((-----((((((((........)))))))))(((..((.((.(((((((((((((..((....))..).).)))))))))))...)))))))))). ( -37.00) >DroSec_CAF1 14381 95 + 1 CGGCCG------GCAAAUGUUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCUGAUGAUGAUGACGGCGAUGGGGCG ..((((------(((((((........)))))))).(((..((.((.(((((((((((((..((....))..).)).))))))))))...)))))))))). ( -37.40) >DroSim_CAF1 14950 96 + 1 CGGCCG-----GGCAAAUGUUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCUGAUGAUGAUGACGGCGAUGGGGCG ..((((-----((((((((........)))))))))(((..((.((.(((((((((((((..((....))..).)).))))))))))...)))))))))). ( -37.90) >DroYak_CAF1 15693 95 + 1 CGGCCGGUUUCGGCAAAUGUUUCGAUUUAUUUGCGGCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGUGGAUGAUGAUGAUGAUGAUG------GGGCG .(((((....).(((((((........)))))))))))....((.(((((((((((((.(..(((.....)))..)))))))))))).))------.)).. ( -37.10) >consensus CGGCCG_____GGCAAAUGUUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCUGAUGAUGAUGACGGCGAUGGGGCG ..(((......((((((((........)))))))).(((...(((..(((((((((((((((((....))))).).))))))))))).)))...)))))). (-27.55 = -28.92 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:55 2006