Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,579,910 – 7,580,005 |
Length | 95 |
Max. P | 0.651738 |
Location | 7,579,910 – 7,580,005 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 78.14 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -25.36 |
Energy contribution | -24.68 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.31 |
Mean z-score | -1.48 |
Structure conservation index | 0.76 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7579910 95 + 22224390 ------UUGGGCGGCGGUGCCAGAC----------------UGGCGGUGUUGCCAUUAGCCGGUUACCGUUUUCAAGCCAAGUCUAGCUAGUUUUUGUGUACCGCCGAAAAAUACAU ------.....((((((((((((((----------------((((((((..(((.......)))))))(((....)))........)))))))..)).))))))))).......... ( -34.00) >DroSec_CAF1 2703 111 + 1 ------UUGGGCGGCGGUGCCAGACUGGCGGCGGGCCAGAUUAGUGGUGUUGCCAUUAGCCGGUUACCGUUUUCAAGCCAAAUCUAGCUAGCUUUUGUGUACCGCCGAAAUAUACCU ------..((.(((((((((((((..(((((((((((.(.(((((((.....)))))))).)))..)))))....(((........))).))))))).))))))))).......)). ( -41.10) >DroSim_CAF1 2892 95 + 1 ------UUGGGCGGCGGUGCCAGAC----------------UAGUGGUGUUGCCAUUAGCCGGCUACCGUUUUCAAGCCAAAUCUAGCUAGCUUUUGUGUACCGCCGAAAUAUACCU ------..((.((((((((((((((----------------((((((.....)))))))..((((..........))))..............)))).))))))))).......)). ( -34.10) >DroEre_CAF1 2715 101 + 1 UGACAUGUGGGUGGCGGUGCCAGAC----------------UCGCUGCAUUGCCUCUAACCGGUUAUCGUUUUCAAGCCAAAUCUAGCUGGAUUUUGUGUAUAGCUAAAAAAUACAA ..((((.((((.((((((((.((..----------------...)))))))))))))).(((((((..((((.......)))).))))))).....))))................. ( -23.90) >consensus ______UUGGGCGGCGGUGCCAGAC________________UAGCGGUGUUGCCAUUAGCCGGUUACCGUUUUCAAGCCAAAUCUAGCUAGCUUUUGUGUACCGCCGAAAAAUACAU ...........(((((((((((((..................(((((((..(((.......))))))))))....(((........)))....)))).))))))))).......... (-25.36 = -24.68 + -0.69)
Location | 7,579,910 – 7,580,005 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.14 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -19.27 |
Energy contribution | -19.15 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.22 |
Mean z-score | -1.75 |
Structure conservation index | 0.63 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7579910 95 - 22224390 AUGUAUUUUUCGGCGGUACACAAAAACUAGCUAGACUUGGCUUGAAAACGGUAACCGGCUAAUGGCAACACCGCCA----------------GUCUGGCACCGCCGCCCAA------ ..........(((((((............((((((((.(((.......(((...))).....((....))..))))----------------)))))))))))))).....------ ( -32.60) >DroSec_CAF1 2703 111 - 1 AGGUAUAUUUCGGCGGUACACAAAAGCUAGCUAGAUUUGGCUUGAAAACGGUAACCGGCUAAUGGCAACACCACUAAUCUGGCCCGCCGCCAGUCUGGCACCGCCGCCCAA------ ..........(((((((........((..(((((((((((........(((...))).....((....)))))..))))))))..)).(((.....)))))))))).....------ ( -35.90) >DroSim_CAF1 2892 95 - 1 AGGUAUAUUUCGGCGGUACACAAAAGCUAGCUAGAUUUGGCUUGAAAACGGUAGCCGGCUAAUGGCAACACCACUA----------------GUCUGGCACCGCCGCCCAA------ ...........((((((......(((((((......)))))))......(((.((((((((.(((.....))).))----------------).))))))))))))))...------ ( -35.50) >DroEre_CAF1 2715 101 - 1 UUGUAUUUUUUAGCUAUACACAAAAUCCAGCUAGAUUUGGCUUGAAAACGAUAACCGGUUAGAGGCAAUGCAGCGA----------------GUCUGGCACCGCCACCCACAUGUCA .(((((.........))))).........(((((((((((((((....(..(((....)))..).))).))..)))----------------))))))).................. ( -18.00) >consensus AGGUAUAUUUCGGCGGUACACAAAAGCUAGCUAGAUUUGGCUUGAAAACGGUAACCGGCUAAUGGCAACACCACUA________________GUCUGGCACCGCCGCCCAA______ ..........(((((((............(((((((((((((.(..........).))))))((....))......................))))))))))))))........... (-19.27 = -19.15 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:52 2006