Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,575,225 – 7,575,345 |
Length | 120 |
Max. P | 0.922985 |
Location | 7,575,225 – 7,575,345 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.41 |
Mean single sequence MFE | -46.57 |
Consensus MFE | -31.83 |
Energy contribution | -32.92 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.30 |
Mean z-score | -2.11 |
Structure conservation index | 0.68 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922985 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7575225 120 + 22224390 GGAUCACGAUACCGCCACGCUCUCCUCACAUCACGGCACCUCGCAGAUCACCCUGGUCAGCGAUGAGGCGGAAACCUUCAUCCUGACCGCCUACGAGGAGGGCGUCUCGGAUGACACUGU ...........(((..(((((((((((..(((...((.....)).)))......((((((.(((((((.(....))))))))))))))......)))))))))))..))).......... ( -51.10) >DroVir_CAF1 90721 114 + 1 GAACG---CAACGGCCAUGUCCUCCUCGCAUCAUGCCAGCUCGCAAAUAACGCUGGUC---GAUGAGACCGAGACAUUCAUAUUGACCGCCUACGAGGAGAGCGUGGCCGAUGAUACGGU .....---((.((((((((..(((((((.....(((......)))......((.((((---((((.((.........)).))))))))))...)))))))..)))))))).))....... ( -45.10) >DroGri_CAF1 10787 117 + 1 GGAUA---CAACGGCAUUGUCCUCCUCACAUCAUGCCAGCUCACAAAUAACGCUGGUCAGCGAUGAGGCCGAAACAUUCAUAUUGACCGCCUAUGAGGAGAGCGUUGCCGAUGAUACGGU .....---((.(((((.((..(((((((((((.(((((((...........))))).))..))))((((.(...((.......)).).)))).)))))))..)).))))).))....... ( -42.40) >DroEre_CAF1 14741 120 + 1 GGAUCAUGAUACCGCCACGCUUUCCUCGCAUCACGGCGCCUCGCAGAUCACGCUGGUCAGCGAUGAGGCGGAGACCUUUAUCCUCACCGCCUACGAGGAGGGCGUUUCGGAUGACACUGU (..((((....(((..((((((((((((((((.(.(((...))).((((.....)))).).))))((((((.((.........)).)))))).))))))))))))..)))))))..)... ( -47.40) >DroYak_CAF1 13502 120 + 1 GGAUCACGAUACCGCCACACUUUCCUCGCAUCACGGCGCCUCGCAGAUCACGCUGGUCAGCGAUGAGGCGGAGACCUUCAUCCUGACCGCCUACGAGGAGGGCGUUUCGGAUGACACUGU ..(((.(((...((((.....(((((((......(((.....((.......)).((((((.(((((((.(....)))))))))))))))))..)))))))))))..))))))........ ( -47.50) >DroAna_CAF1 4909 120 + 1 GGAUCCGGACACGGCCACUGUCUCCUCCCACCACGGGGCCUCGCAGAUCACCUUGGUUAGCGAGGAGGCGGAGACCUUUAUCCUGACCGCCUACGAGGAGGGCGUAGCGGAUGACUCAGU ((..(((....)))))...((((((((((.....))))((((((.((((.....)))).))))))....))))))..((((((....(((((.......)))))....))))))...... ( -45.90) >consensus GGAUCA_GAUACCGCCACGCUCUCCUCGCAUCACGGCACCUCGCAGAUCACGCUGGUCAGCGAUGAGGCGGAGACCUUCAUCCUGACCGCCUACGAGGAGGGCGUUGCGGAUGACACUGU ...........(((..(((((((((((......((......))...........((((((.(((((((.(....))))))))))))))......)))))))))))..))).......... (-31.83 = -32.92 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:50 2006