Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,569,523 – 7,569,629 |
Length | 106 |
Max. P | 0.920312 |
Location | 7,569,523 – 7,569,629 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 86.96 |
Mean single sequence MFE | -27.04 |
Consensus MFE | -22.09 |
Energy contribution | -24.76 |
Covariance contribution | 2.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.69 |
Structure conservation index | 0.82 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7569523 106 - 22224390 UAAUAUAAAUAGCUUAAGACACCAAUUAUCGCGACUGGAUU---------UCUCAAAAAUAAAAAAAAGCAGGAUCUAAUGCAAAAUCGAGUCGUGAUUUGGCUGCAUUAUAUAA ..((((((.(((((.............(((((((((.((((---------(.................(((........))).))))).)))))))))..)))))..)))))).. ( -22.23) >DroSec_CAF1 61926 115 - 1 UAAUAUAAAUUCCUUAAGACUCCAAUGAUCGCGACUGGAUUUUGGGGGUUUCUCAAAGAAAAAAAAAAGCAGGAUCUAAUGCAAAAUCGAGUCGUGAUAUGGCUGCUUUAUAUAA ...............(((...(((...(((((((((.((((((.(((....)))..............(((........))))))))).))))))))).)))...)))....... ( -27.70) >DroSim_CAF1 55741 113 - 1 UAAUAUAAAUAGCUUUAGACUCUAAUGAUCGCGACUGGAUUUUGGGGGUUUCUCAAAUAAA--AAAAGGCAGGAUCUAAUGCAAAAUCGAGUCGUGAUAUGGCUGCUUUAUAUAA ..((((((((((((((((...))))..(((((((((.((((((.(((....))).......--.....(((........))))))))).)))))))))..))))).))))))).. ( -31.20) >consensus UAAUAUAAAUAGCUUAAGACUCCAAUGAUCGCGACUGGAUUUUGGGGGUUUCUCAAAAAAAAAAAAAAGCAGGAUCUAAUGCAAAAUCGAGUCGUGAUAUGGCUGCUUUAUAUAA ..((((((((((((.............(((((((((.((((((.(((....)))..............(((........))))))))).)))))))))..))))).))))))).. (-22.09 = -24.76 + 2.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:46 2006