Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,566,974 – 7,567,065 |
Length | 91 |
Max. P | 0.722592 |
Location | 7,566,974 – 7,567,065 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 89.01 |
Mean single sequence MFE | -15.63 |
Consensus MFE | -13.19 |
Energy contribution | -13.97 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.06 |
Mean z-score | -2.06 |
Structure conservation index | 0.84 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7566974 91 + 22224390 AGAGGUGCUCUAAAAGGGAGGAGCUAUAAUCGCAAAAUAAAUUGUCAUUGUUUCCACAGUCAUAACAAAGAAAUGAAUAACAAAGGAAAGA ..((.(.((((.....)))).).)).((((.((((......)))).))))(((((....((((.........))))........))))).. ( -11.80) >DroSec_CAF1 59379 91 + 1 AGAGGUUCUUUAAAAGGGAGGAGCUAUUAUCGAAAAAUAAAUUGUGAUUGUUUUCACAGUCAUAACAAUGAAAAGAAUAAAAAAGCGAAGU ...((((((((......))))))))................((((((((((....)))))))))).......................... ( -16.20) >DroSim_CAF1 53461 90 + 1 AGAGGUUCCUUAAAAGGGAGGAGCUAUUAACGAAAAAUAAAUUGUGAUUGUUUUCACAGUCAUAACAAUGAAAAGAA-AAAAAAGCGAAGU ...((((((((......))))))))................((((((((((....))))))))))............-............. ( -18.90) >consensus AGAGGUUCUUUAAAAGGGAGGAGCUAUUAUCGAAAAAUAAAUUGUGAUUGUUUUCACAGUCAUAACAAUGAAAAGAAUAAAAAAGCGAAGU ...((((((((......))))))))................((((((((((....)))))))))).......................... (-13.19 = -13.97 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:44 2006