| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,565,731 – 7,565,841 |
| Length | 110 |
| Max. P | 0.524939 |
| Location | 7,565,731 – 7,565,841 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 95.12 |
| Mean single sequence MFE | -29.57 |
| Consensus MFE | -24.97 |
| Energy contribution | -24.53 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.84 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7565731 110 + 22224390 UUCAUCCAUCCAUCAAGGACAAUCAAGGCAAACGCGCGAGAGCUUUUUGUGGGUUUGAUUUUGGGCUCAGGCCAACAAAAAAAAGAUUCCUUUUCCUUUUUGGCCCAAAA .....((.(((.....)))....((((((((((.(((((((...))))))).))))).)))))))....((((((.((..(((((....)))))..)).))))))..... ( -28.80) >DroSec_CAF1 58133 108 + 1 UUCAUCCAUCCAUCAAGGACAAUCAAGGCAAACGCGCGAGAGCUUUUUGUGGGUUUGAUUUUGGGCUCCGGCA--CAAAAACAGAAUUUCUUUUCCUUUUUGGCCCAAAA ................(((...(((((((((((.(((((((...))))))).))))).))))))..)))(((.--((((((..(((......))).)))))))))..... ( -28.40) >DroSim_CAF1 52226 108 + 1 UUCAUCCAUCCAUCAAGGACAAUCAAGGCAAACGCGCGAGAGCUUUUUGUGGGUUUGAUUUUGGGCUCAGGCC--CAAAAACAGAAUUUCUUUUCCUUUUUGGCCCAAAA .........(((..(((((.........(((((.(((((((...))))))).))))).((((((((....)))--))))).............)))))..)))....... ( -31.50) >consensus UUCAUCCAUCCAUCAAGGACAAUCAAGGCAAACGCGCGAGAGCUUUUUGUGGGUUUGAUUUUGGGCUCAGGCC__CAAAAACAGAAUUUCUUUUCCUUUUUGGCCCAAAA .(((...(((((.((((((........((....))((....))))))))))))).)))((((((((.........((((((..(((.....)))..)))))))))))))) (-24.97 = -24.53 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:43 2006