Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,562,446 – 7,562,562 |
Length | 116 |
Max. P | 0.529728 |
Location | 7,562,446 – 7,562,562 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -29.23 |
Consensus MFE | -16.19 |
Energy contribution | -15.97 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.84 |
Structure conservation index | 0.55 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7562446 116 - 22224390 --ACA--CGAAGAACCUGUCAGAAAGGGUUCAACGCAAAUUCGAUUUUGAAAAACGUUGUGAUGCAUGCGUAUCUCUGGCAGCGGGCAAAGUUGCAAAUGAAAUUUUGUCAAAUUUUCAG --...--.(((((.(((((((((.......(((((....((((....))))...))))).(((((....))))))))))))).)(((((((((........)))))))))...))))).. ( -31.80) >DroPse_CAF1 120844 101 - 1 --CCAUAGAGAGAACCUGCC-GAAAGGGUUCAAAUCAAAUUCGAUUU-GGGCAACGAUGUG---------------UGGCAACGACCAAAGUUGCAAAUGAAAUUUUGUCAAAUUUUCAG --.((((.(..(......((-....))(((((((((......)))))-))))..)..).))---------------))(((((.......)))))...(((((...........))))). ( -25.80) >DroSec_CAF1 54831 116 - 1 --ACA--CGAAGAACCUGUCAGAAAGGGUUCAACGCAAAUUCGAUUUUGGGAAACGUUGUGAUGCAUGCGUAUCUCUGGCAGCGGGCAAAGUUGCAAAUGAAAUUUUGUCAAAUUUUCAG --...--.(((((.(((((((((.......((((.((((......))))(....))))).(((((....))))))))))))).)(((((((((........)))))))))...))))).. ( -33.40) >DroSim_CAF1 48561 116 - 1 --ACA--CGAAGAACCUGUCAGAAAGGGUUCAACGCAAAUUCGAUUUUGGGAAACGUUGUGAUGCAUGCGUAUCUCUGGCAGCGGGCAAAGUUGCAAAUGAAAUUUUGUCAAAUUUUCAG --...--.(((((.(((((((((.......((((.((((......))))(....))))).(((((....))))))))))))).)(((((((((........)))))))))...))))).. ( -33.40) >DroYak_CAF1 56518 98 - 1 CCACA--CGAGGAACCUGUCAGAAAGGGUUCAACUCAAAUUCGAUU--------------------UGCGUAUCUCUGGCAGCGGGCAAAGUUGCAAAUGAAAUUUUGUCAAAUUUUCAG .....--.(((((.(((((((((..(((.....)))......(((.--------------------.....))))))))))).)(((((((((........)))))))))...))))).. ( -25.20) >DroPer_CAF1 127910 101 - 1 --CCAUAGAGAGAACCUGCC-GAAAGGGUUCAAAUCAAAUUCGAUUU-GGGCAACGAUGUG---------------UGGCAACGACCAAAGUUGCAAAUGAAAUUUUGUCAAAUUUUCAG --.((((.(..(......((-....))(((((((((......)))))-))))..)..).))---------------))(((((.......)))))...(((((...........))))). ( -25.80) >consensus __ACA__CGAAGAACCUGUCAGAAAGGGUUCAACGCAAAUUCGAUUU_GGGAAACGUUGUG_____UGCGUAUCUCUGGCAGCGGGCAAAGUUGCAAAUGAAAUUUUGUCAAAUUUUCAG ...........((((((........))))))...............................................(((((.......)))))...(((((...........))))). (-16.19 = -15.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:41 2006