Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,562,265 – 7,562,356 |
Length | 91 |
Max. P | 0.737724 |
Location | 7,562,265 – 7,562,356 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.00 |
Mean single sequence MFE | -19.27 |
Consensus MFE | -10.92 |
Energy contribution | -11.25 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.57 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7562265 91 - 22224390 --------------ACAUGGACA----G---------AAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGCUGUAACGUUAACACCACAACGCCAUGUCACCAACAA--ACC --------------((((((.(.----.---------...((((....))))........(((((..(((((.....)))))...))))).........))))))).........--... ( -18.70) >DroPse_CAF1 120630 96 - 1 --------------ACACGCACGCACACAUCCUGCAAAGAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGAUGUAACGUUAACACCACAACGACAUGUCACU---------- --------------....((..(((.......))).....((((....))))...............))........(((((..((((........))))..)))))...---------- ( -16.20) >DroSec_CAF1 54652 91 - 1 --------------ACAUGGACA----G---------AAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGCUGUAACGUUAACACCACAACGCCAUGUCACCAACAA--GCC --------------((((((.(.----.---------...((((....))))........(((((..(((((.....)))))...))))).........))))))).........--... ( -18.70) >DroYak_CAF1 56314 93 - 1 --------------ACAUGGACG----G---------AAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGCUGUAACGUUAACACCACAACGCCAUGUCACCAACAAAAACG --------------((((((.((----.---------...((((....))))........(((((..(((((.....)))))...)))))........)))))))).............. ( -20.90) >DroAna_CAF1 59165 116 - 1 UGCCCUCCACACGCACAUGGACACUCGG--AGAGCCACAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGAUGUACCGUUAACACCACUGCGACAUGUCACCAACAA--GCC .((..((((........)))).....((--.(((((((.........))))).............(((((((..((((......))))......)))))))....)).)).....--)). ( -24.90) >DroPer_CAF1 127705 96 - 1 --------------ACACGCACGCACACAUCCUGCAAAGAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGAUGUAACGUUAACACCACAACGACAUGUCACU---------- --------------....((..(((.......))).....((((....))))...............))........(((((..((((........))))..)))))...---------- ( -16.20) >consensus ______________ACAUGGACA____G_________AAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGAUGUAACGUUAACACCACAACGACAUGUCACCAACAA___CC ..............(((((.....................((((....))))......................((((......)))).............))))).............. (-10.92 = -11.25 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:40 2006