Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,558,194 – 7,558,308 |
Length | 114 |
Max. P | 0.799110 |
Location | 7,558,194 – 7,558,308 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 80.34 |
Mean single sequence MFE | -47.80 |
Consensus MFE | -31.05 |
Energy contribution | -29.83 |
Covariance contribution | -1.22 |
Combinations/Pair | 1.40 |
Mean z-score | -1.89 |
Structure conservation index | 0.65 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7558194 114 - 22224390 GUCAGGAUAUCGAUGCCAAGUCGGAAUCGGCAUCGGUUAGUGCCUCACUUUCGGCACCCGAUCUUUGCGAUGAAGAUUCACUGGAACGAAAUUCCAGUGAUACGGGUGCCGGUU ((.(((..(((((((((...........))))))))).....))).))..((((((((((((((((.....))))))(((((((((.....)))))))))..)))))))))).. ( -53.40) >DroPse_CAF1 115020 113 - 1 -CCAGGACAUGGACGCCAGGUCGGAGUCGGCCUCGGUCACGGCCUCCGUGUCCGCUCCCGAUCUCUGCGACGAGGACUCGUUGGGACGUGGCUCGAACGACACCACCGCCGGCC -((.((...(((..((((.(((((((((((...(((.(((((...))))).)))...)))).)))).((((((....)))))).))).))))((....))..)))...)))).. ( -47.40) >DroSec_CAF1 50670 114 - 1 GCCAGGAUACCGAUGCCAAGUCGGAAUCGGCAUCGGUUAGUGCCUCACUUUCGGCACCCGAUCUCUGCGAUGAAGAUUCACUGGGACGAAAUUCCAGUGACACGGGCGCCGGUU ((((((..(((((((((...........))))))))).....))).......(((.(((((((((......).))))(((((((((.....)))))))))..)))).)))))). ( -48.20) >DroEre_CAF1 62180 114 - 1 GCCAAGAUACCGAUGCCAAAUCGGAAUCGGCAUCGGUGAGUGCCUCACUUUCAGCACCCGAUCUUUGCGAUGAGGAUUCGCUGGGACGAAAUUCUAGUGACAUGGGCGCCGGCU (((....((((((((((...........)))))))))).((((((..(((...(((.........)))...)))...(((((((((.....)))))))))...)))))).))). ( -43.50) >DroYak_CAF1 52136 114 - 1 GCCAGGACACCGAUGCCAAGUCGGAAUCGGCAUCGGUAAGUGCCUCACUUUCGGCACCCGAUCUCUGCGAUGACGAUUCGCUGGGACGCAACUCCAGUGACACGGGCGCCGGUU (((((((((((((((((...........)))))))))..)).))).......(((.(((((((((......)).)))((((((((.......))))))))..)))).)))))). ( -46.70) >DroPer_CAF1 121135 113 - 1 -CCAGGACAUGGACGCCAGGUCAGAGUCGGCCUCGGUCACGGCCUCCGUGUCCGCUCCCGAUCUGUGCGACGAGGACUCGUUGGGACGCGGCUCGAACGACACCACCGCCGGCC -...(((((((((.((((((((......))))).(....)))).)))))))))(((((((((..((.(.....).))..))))))).))(((.((..((.......)).))))) ( -47.60) >consensus GCCAGGACACCGAUGCCAAGUCGGAAUCGGCAUCGGUCAGUGCCUCACUUUCGGCACCCGAUCUCUGCGAUGAGGAUUCGCUGGGACGAAACUCCAGUGACACGGGCGCCGGCU (((..(((.(((((.....))))).)))(((.((((...((((..........))))))))................((((((((.......)))))))).......)))))). (-31.05 = -29.83 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:33 2006