Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,557,205 – 7,557,303 |
Length | 98 |
Max. P | 0.683072 |
Location | 7,557,205 – 7,557,303 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.68 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -15.66 |
Energy contribution | -15.33 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.11 |
Mean z-score | -1.85 |
Structure conservation index | 0.72 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7557205 98 - 22224390 UUAUCAAACGUAUGGAUUUUCAUGAGUUUGCAAAU-UUCUGCAC---------------AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAGUAACAAAAC------AAA .....((((.(((((....))))).))))(((..(-((((((..---------------......)))))))...)))((((...((........))..))))........------... ( -20.50) >DroPse_CAF1 113207 114 - 1 UUAUCAAACGUAUGGAUAUCCAUGAGUUUGCAAAUUUUCUGUACACAACCGAUCAAUGCACUGAGGCAGAAAAACUGCAAUGGAAGCCAAUCGCAGGAGCAGAAACAAAGC------AAA ....(((((.(((((....))))).))))).....(((((((.(............(((......)))......((((..(((...)))...))))).)))))))......------... ( -24.80) >DroSec_CAF1 49701 98 - 1 UUAUCAAACGUAUGGAUUUUCAUGAGUUUGCAAAU-UUCUGCAC---------------AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAAUAACAAAAC------AAA ............(((.((((((.(....((((..(-((((((..---------------......)))))))...))))))))))))))......................------... ( -18.40) >DroEre_CAF1 61172 98 - 1 UUAUCAAAUGUAUGGAUUUUCAUGAGUUUGCAAAU-UUCUGCAC---------------AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAGUAACGAUAC------AAA ........(((((.(..............(((..(-((((((..---------------......)))))))...)))((((...((........))..))))..).))))------).. ( -22.00) >DroYak_CAF1 51220 104 - 1 UUAUCAAACGUGUGGAUUUUCAUGAGUUUGCAAAU-UUCUGCAC---------------AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAGUAACAAUACAACAACAAA ..........((..(((((....)))))..))..(-((((((..---------------......)))))))..((..((((...((........))..)))).)).............. ( -20.50) >DroPer_CAF1 119268 113 - 1 UUAUCAAACGUAUGGAUAUCCAUGAGUUUGCAAAU-UUCUGUACACAACCGAUCAAUGCACUGAGGCAGAAAAACUGCAAUGGAAGCCAAUCGCAGGAACAGAAACAAAGC------AAA ....(((((.(((((....))))).)))))....(-((((((.(............(((......)))......((((..(((...)))...))))).)))))))......------... ( -24.60) >consensus UUAUCAAACGUAUGGAUUUUCAUGAGUUUGCAAAU_UUCUGCAC_______________AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAGUAACAAAAC______AAA ............(((.((((((......((((....((((((.......................))))))....)))).)))))))))............................... (-15.66 = -15.33 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:32 2006