Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,553,772 – 7,553,870 |
Length | 98 |
Max. P | 0.998556 |
Location | 7,553,772 – 7,553,870 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.87 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -12.55 |
Energy contribution | -13.30 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.26 |
Mean z-score | -2.65 |
Structure conservation index | 0.53 |
SVM decision value | 3.14 |
SVM RNA-class probability | 0.998556 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7553772 98 + 22224390 ----CUAUACCUUCUGGUUGGAUAAGUCUUUAAGACACUUUUGACCUUGAGUGGGAAAAUUCCAAUGUG----UAGUUGGAAAAUAGGAUAUCUAUCCUAUC------CUAC-------- ----........((.(((..((...(((.....)))...))..)))..))((((((...(((((((...----..)))))))..((((((....))))))))------))))-------- ( -29.60) >DroSec_CAF1 46329 89 + 1 AGAACUAUACCUUCUGGUUGGAUAUGUCUUUAAGACACUUUUGACCUUGAGUGGAAAAAUCCCAAUGUG----UUGUUGGUA------------AUCCUA-C------CUAA-------- ..(((.(((((((..(((..((..((((.....))))..))..)))..)))(((.......)))..)))----).)))((((------------....))-)------)...-------- ( -22.30) >DroEre_CAF1 57661 92 + 1 ----CUAUAACUUAUGGUUGGAUAAGUCUUUAAGAUAAUUCUGACCAUAACUCGGAAAAUACCAAUAUGUGCAUAGUUGGUAAU---------AACCCUA-A------CUAA-------- ----.......(((((((..((...(((.....)))...))..)))))))...((....(((((((.........)))))))..---------..))...-.------....-------- ( -20.80) >DroYak_CAF1 47527 102 + 1 ----CUAUAACUUAUGGUUGGAUAAAUCUUUAAGAUAACUCUGACCUUGAGUAGGAAAAUCCCAAAGUG----UAAUUAGUAAU---------UAUCCUA-AAAGUUACUAAGUUUGGUA ----.....(((((.(((..((...(((.....)))...))..))).))))).........(((((...----...((((((((---------(......-..))))))))).))))).. ( -22.30) >consensus ____CUAUAACUUAUGGUUGGAUAAGUCUUUAAGACAAUUCUGACCUUGAGUGGGAAAAUCCCAAUGUG____UAGUUGGUAAU_________UAUCCUA_A______CUAA________ ..........((((.(((..((...(((.....)))...))..))).))))........(((((((.........)))))))...................................... (-12.55 = -13.30 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:29 2006