Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,553,168 – 7,553,259 |
Length | 91 |
Max. P | 0.566983 |
Location | 7,553,168 – 7,553,259 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 78.62 |
Mean single sequence MFE | -20.26 |
Consensus MFE | -11.86 |
Energy contribution | -12.26 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.30 |
Mean z-score | -1.73 |
Structure conservation index | 0.59 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566983 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7553168 91 + 22224390 CAAACACACAC--ACGGACACACAUAAAAGCCGCAGGUAU---ACAUAUCUGUAUCUGAGUGUGGAGUAUGUUUGUAUAAUCAUGUGAUACCAAAA ....((((...--....(((.(((((...(((.(((((((---(......)))))))).).))....))))).))).......))))......... ( -19.94) >DroSec_CAF1 45749 94 + 1 CAAACACACAC--ACGCACACACAUACAAGCCGCAGGUAUACUACAUAUCUGUAUCUGAGUGUGGAGUAUGUUUGUAUAAUCAUGUGAUACCAAAA .....(((.((--(..(.(((((.....((..((((((((.....))))))))..))..)))))..)..))).)))...(((....)))....... ( -20.30) >DroSim_CAF1 45053 94 + 1 CAAACACACAC--ACGCACACACAUACAAGCCGCAGGUAUACUACAUAUCUGUAUUAAGUUGUGGAGUAUGUUUGUAUAAUCAUGUGAUACCAAAA ....((((...--....(((.((((((...((((((.(.((.((((....)))).))).)))))).)))))).))).......))))......... ( -20.94) >DroEre_CAF1 57067 89 + 1 CAAACACACACACACGUACACGCAUACAAGCCGCAGGUAU-------AUCUGUAUCUGAGUGUGGAGUAUGUCUGUAUAAUCAUGUGAUACCAAAA ......((((.....(((((.((((((..(((.(((((((-------....))))))).).))...)))))).))))).....))))......... ( -23.50) >DroAna_CAF1 50080 82 + 1 -------------GCGCACACACACUGCCGCGGAAGGUG-ACUGUAUACCUGCGUGUAUGUUUGGGAUAUGUUUGUAUAAUCAUGUGAUACCAAAA -------------.((((((.(((.((((((((.((...-.))......))))).)))))).)).(((.(((....)))))).))))......... ( -16.60) >consensus CAAACACACAC__ACGCACACACAUACAAGCCGCAGGUAUACUACAUAUCUGUAUCUGAGUGUGGAGUAUGUUUGUAUAAUCAUGUGAUACCAAAA ................(((((((((.......((((((((.....))))))))......)))))((.((((....)))).)).))))......... (-11.86 = -12.26 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:28 2006